Miyakogusa Predicted Gene

Lj5g3v0962670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962670.1 Non Characterized Hit- tr|G7LCB4|G7LCB4_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,41.67,0.000003,seg,NULL; coiled-coil,NULL,CUFF.54364.1
         (274 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g018620.1 | hypothetical protein | LC | chr7:6081254-60822...    49   6e-06
Medtr1g108685.1 | transmembrane protein, putative | LC | chr1:49...    49   7e-06

>Medtr7g018620.1 | hypothetical protein | LC | chr7:6081254-6082280
           | 20130731
          Length = 330

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 2   FPEFNGSV-AYGWIITVEQYCEAKGIXXXXXXXXXXXXLARDALFWWYSWKKRNQRAKWW 60
            P+F+GS  AY W+I +E++ +  G             L   AL WW  W + +  A W 
Sbjct: 63  MPQFDGSSDAYWWLICIEKHFDVVGTQEGEKLLEAVKALRNRALVWWQWWSRCHLHASWR 122

Query: 61  DFVIALLREFEPESELYLP 79
            F IALL  F+PE    LP
Sbjct: 123 AFHIALLWHFKPEYRDVLP 141


>Medtr1g108685.1 | transmembrane protein, putative | LC |
           chr1:49121992-49122868 | 20130731
          Length = 280

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 2   FPEFNGSV-AYGWIITVEQYCEAKGIXXXXXXXXXXXXLARDALFWWYSWKKRNQRAKWW 60
            P+F+GS  AY W+I +E++ +  G             L   AL WW  W + +  A W 
Sbjct: 126 MPQFDGSSDAYWWLICIEKHFDVVGTQEGEKLLEAVKALRNRALVWWQWWSRCHLHASWR 185

Query: 61  DFVIALLREFEPESELYLP 79
            F IALL  F+PE    LP
Sbjct: 186 AFHIALLWHFKPEYRDVLP 204