Miyakogusa Predicted Gene

Lj5g3v0962660.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962660.1 tr|B9H1H5|B9H1H5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555374 PE=4
SV=1,43.48,9e-18,seg,NULL,CUFF.54362.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032400.1 | hypothetical protein | HC | chr1:11498752-1149...   140   4e-34
Medtr1g032050.1 | hypothetical protein | HC | chr1:11340556-1134...   140   4e-34
Medtr7g094650.1 | Lipid transfer protein related | HC | chr7:377...    95   3e-20

>Medtr1g032400.1 | hypothetical protein | HC |
           chr1:11498752-11499222 | 20130731
          Length = 156

 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 93/157 (59%), Gaps = 9/157 (5%)

Query: 1   MKRVKIFNFTITLALIFLASVPKMESRIXXXXXXXX--XXXXLCASQLALVNYACARLPF 58
           MKRV +F  ++TL L FLA  PKMES I              LCA QLALV+YAC  LP+
Sbjct: 1   MKRVNVFK-SLTLVLTFLAFAPKMESEIIPPVIHLPPPALRPLCAPQLALVSYACGMLPY 59

Query: 59  TPGSPPSSQL-----TSTNDDGEXXXXXXXXXXXXXXXXXX-XPQEENCCRWAGELDSQC 112
           TPGSP S  L     +S+ND G                      QE+NCCRWA  LDS+C
Sbjct: 60  TPGSPSSPILPPLSPSSSNDGGGHQSHHNHHHRHGHRHRHHDTTQEDNCCRWARALDSRC 119

Query: 113 VCEILVRLPPFLTRPAHQYSVTIGESCNITYSCGGPI 149
           VCEILVRLPPFL RP H YSV  GESC +TYSCGGPI
Sbjct: 120 VCEILVRLPPFLIRPLHTYSVVFGESCTVTYSCGGPI 156


>Medtr1g032050.1 | hypothetical protein | HC |
           chr1:11340556-11341390 | 20130731
          Length = 156

 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 93/157 (59%), Gaps = 9/157 (5%)

Query: 1   MKRVKIFNFTITLALIFLASVPKMESRIXXXXXXXX--XXXXLCASQLALVNYACARLPF 58
           MKRV +F  ++TL L FLA  PKMES I              LCA QLALV+YAC  LP+
Sbjct: 1   MKRVNVFK-SLTLVLTFLAFAPKMESEIIPPVIHLPPPALRPLCAPQLALVSYACGMLPY 59

Query: 59  TPGSPPSSQL-----TSTNDDGEXXXXXXXXXXXXXXXXXX-XPQEENCCRWAGELDSQC 112
           TPGSP S  L     +S+ND G                      QE+NCCRWA  LDS+C
Sbjct: 60  TPGSPSSPILPPLSPSSSNDGGGHQSHHNHHHRHGHRHRHHDTTQEDNCCRWARALDSRC 119

Query: 113 VCEILVRLPPFLTRPAHQYSVTIGESCNITYSCGGPI 149
           VCEILVRLPPFL RP H YSV  GESC +TYSCGGPI
Sbjct: 120 VCEILVRLPPFLIRPLHTYSVVFGESCTVTYSCGGPI 156


>Medtr7g094650.1 | Lipid transfer protein related | HC |
           chr7:37733712-37734227 | 20130731
          Length = 171

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query: 97  QEENCCRWAGELDSQCVCEILVRLPPFLTRPAHQYSVTIGESCNITYSCGGPI 149
           ++ENCCRWA E+D+QCVCE+LVRLPPFL RP H Y++ IGE C ITYSCGGPI
Sbjct: 119 EQENCCRWAREVDNQCVCELLVRLPPFLVRPLHLYTLNIGEDCEITYSCGGPI 171



 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 1  MKRVKIFNFTITLALIFLASVPKMESRIXXXXXXXXXXXXLCASQLALVNYACARLPFTP 60
          MK+++IF   + +AL  LA VPK+ES              LCASQ ALVNYAC RLPFTP
Sbjct: 1  MKKIEIFKI-MAMALTLLAIVPKIESE--GRPTTPTNQRPLCASQFALVNYACGRLPFTP 57

Query: 61 G 61
          G
Sbjct: 58 G 58