Miyakogusa Predicted Gene
- Lj5g3v0962650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0962650.1 CUFF.54361.1
(393 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 687 0.0
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 687 0.0
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 662 0.0
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 662 0.0
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 186 3e-47
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 186 3e-47
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 185 8e-47
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 185 8e-47
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 185 8e-47
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 185 8e-47
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 179 4e-45
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 174 1e-43
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 168 8e-42
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 167 1e-41
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 167 1e-41
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 161 1e-39
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 154 1e-37
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 152 5e-37
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 140 2e-33
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 139 5e-33
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 134 1e-31
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 134 2e-31
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 128 1e-29
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 128 1e-29
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 127 2e-29
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 118 9e-27
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 112 5e-25
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 109 4e-24
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 103 3e-22
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 94 2e-19
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 90 5e-18
Medtr2g017885.1 | plant organelle RNA recognition domain protein... 70 5e-12
Medtr7g009010.1 | plant organelle RNA recognition domain protein... 54 2e-07
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/393 (84%), Positives = 361/393 (91%)
Query: 1 MFSKTKTQAFSSYXXXXXXXXXIDTRSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKE 60
MFSKTK Q F Y + TR ISSLKVVWRKDQ+LD+AI+ DKR+KQC RVVKE
Sbjct: 1 MFSKTKIQTFFCYYLNNNLNIHVHTRLISSLKVVWRKDQSLDQAIEQDKRFKQCARVVKE 60
Query: 61 VLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDR 120
VLNEPGQVIPLRYLEKRR+RMRLKVK++TFLNQNPFLFDVYYDRIKPKTEPV+FLRVSD
Sbjct: 61 VLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDH 120
Query: 121 LRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR 180
L QFL+EEKR++ NEPLIVSKLCKLLMMSKDK+VSADKLLHVKREFGFPNDFLVDLVPR
Sbjct: 121 LLQFLQEEKRIYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPR 180
Query: 181 YPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFV 240
YPEYFRLTGLPGEGKSFLELV WNPEFAKSVIERRAEEESR TGIRVRP+FNVKLP GFV
Sbjct: 181 YPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFV 240
Query: 241 LKKEMREWVRDWLELEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILG 300
LKKEMREW+RDW+EL+YVSPYEDVS L+QA REMEK +GVFHELLSLSLYKRVPVPILG
Sbjct: 241 LKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILG 300
Query: 301 KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVE 360
KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA+LREAYDGDKLID+DPLLQIKD+F E
Sbjct: 301 KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAE 360
Query: 361 LMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
L++EGWR R E+L+LKQEKIK+DMEL+AT+V E
Sbjct: 361 LLKEGWRLRAEQLKLKQEKIKQDMELVATRVAE 393
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/393 (84%), Positives = 361/393 (91%)
Query: 1 MFSKTKTQAFSSYXXXXXXXXXIDTRSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKE 60
MFSKTK Q F Y + TR ISSLKVVWRKDQ+LD+AI+ DKR+KQC RVVKE
Sbjct: 1 MFSKTKIQTFFCYYLNNNLNIHVHTRLISSLKVVWRKDQSLDQAIEQDKRFKQCARVVKE 60
Query: 61 VLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDR 120
VLNEPGQVIPLRYLEKRR+RMRLKVK++TFLNQNPFLFDVYYDRIKPKTEPV+FLRVSD
Sbjct: 61 VLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDH 120
Query: 121 LRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR 180
L QFL+EEKR++ NEPLIVSKLCKLLMMSKDK+VSADKLLHVKREFGFPNDFLVDLVPR
Sbjct: 121 LLQFLQEEKRIYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPR 180
Query: 181 YPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFV 240
YPEYFRLTGLPGEGKSFLELV WNPEFAKSVIERRAEEESR TGIRVRP+FNVKLP GFV
Sbjct: 181 YPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIERRAEEESRATGIRVRPSFNVKLPPGFV 240
Query: 241 LKKEMREWVRDWLELEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILG 300
LKKEMREW+RDW+EL+YVSPYEDVS L+QA REMEK +GVFHELLSLSLYKRVPVPILG
Sbjct: 241 LKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILG 300
Query: 301 KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVE 360
KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA+LREAYDGDKLID+DPLLQIKD+F E
Sbjct: 301 KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAE 360
Query: 361 LMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
L++EGWR R E+L+LKQEKIK+DMEL+AT+V E
Sbjct: 361 LLKEGWRLRAEQLKLKQEKIKQDMELVATRVAE 393
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/389 (82%), Positives = 352/389 (90%)
Query: 1 MFSKTKTQAFSSYXXXXXXXXXIDTRSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKE 60
MFSKTK F Y TRSISSLKVVWRKD +LD+AI+ DKR+KQC RVVKE
Sbjct: 1 MFSKTKINTFFCYYLNNNFNLYNHTRSISSLKVVWRKDPSLDQAIEQDKRFKQCFRVVKE 60
Query: 61 VLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDR 120
VLNEPGQVIPLRYLEKRR+RMRLKVK++TFLNQNPFLFDVYYDRIKPKT+PV+FLRVSD
Sbjct: 61 VLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDH 120
Query: 121 LRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR 180
L QFLEEEKR++ NEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR
Sbjct: 121 LLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR 180
Query: 181 YPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFV 240
YPEYFRLTGLPGEGKSFLELV WNPEFAKSV+E+RAEEES TGIRVRP+FNVKLP GFV
Sbjct: 181 YPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKRAEEESSATGIRVRPSFNVKLPPGFV 240
Query: 241 LKKEMREWVRDWLELEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILG 300
LKKEMREW+RDW+EL+YVSPYEDVS +Q+ REMEK +GVFHELLSLSLYKR+PVPILG
Sbjct: 241 LKKEMREWIRDWMELDYVSPYEDVSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILG 300
Query: 301 KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVE 360
KFCDEYRFSNAFSSAFTRHSGIFY+SLKGGIETA+LREAY+GDKLI +DPLLQIKD+F E
Sbjct: 301 KFCDEYRFSNAFSSAFTRHSGIFYLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFAE 360
Query: 361 LMEEGWRQRQEELRLKQEKIKKDMELLAT 389
L+ EGWR R E+L+LKQEKIK+DMEL+AT
Sbjct: 361 LLNEGWRLRAEQLKLKQEKIKQDMELVAT 389
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/389 (82%), Positives = 352/389 (90%)
Query: 1 MFSKTKTQAFSSYXXXXXXXXXIDTRSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKE 60
MFSKTK F Y TRSISSLKVVWRKD +LD+AI+ DKR+KQC RVVKE
Sbjct: 1 MFSKTKINTFFCYYLNNNFNLYNHTRSISSLKVVWRKDPSLDQAIEQDKRFKQCFRVVKE 60
Query: 61 VLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDR 120
VLNEPGQVIPLRYLEKRR+RMRLKVK++TFLNQNPFLFDVYYDRIKPKT+PV+FLRVSD
Sbjct: 61 VLNEPGQVIPLRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDH 120
Query: 121 LRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR 180
L QFLEEEKR++ NEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR
Sbjct: 121 LLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPR 180
Query: 181 YPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFV 240
YPEYFRLTGLPGEGKSFLELV WNPEFAKSV+E+RAEEES TGIRVRP+FNVKLP GFV
Sbjct: 181 YPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKRAEEESSATGIRVRPSFNVKLPPGFV 240
Query: 241 LKKEMREWVRDWLELEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILG 300
LKKEMREW+RDW+EL+YVSPYEDVS +Q+ REMEK +GVFHELLSLSLYKR+PVPILG
Sbjct: 241 LKKEMREWIRDWMELDYVSPYEDVSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILG 300
Query: 301 KFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVE 360
KFCDEYRFSNAFSSAFTRHSGIFY+SLKGGIETA+LREAY+GDKLI +DPLLQIKD+F E
Sbjct: 301 KFCDEYRFSNAFSSAFTRHSGIFYLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFAE 360
Query: 361 LMEEGWRQRQEELRLKQEKIKKDMELLAT 389
L+ EGWR R E+L+LKQEKIK+DMEL+AT
Sbjct: 361 LLNEGWRLRAEQLKLKQEKIKQDMELVAT 389
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 200/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP++ L+K+ + + L+ K ++++ P
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGKALNWISKYP 85
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 86 SCFQFHQDHV----------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K GFP+D+L+ +V +YP+ FR+ G S + EL+ WNP+FA S +E
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E R++ + YVSPY D L + +EM
Sbjct: 196 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFREFELVPYVSPYSDPRGLVEGSKEM 246
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 247 EKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTV 306
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D DPL+ +K+KF E+M+EG + + RL + +++ L +V E
Sbjct: 307 LLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKRRNKGLPLNRVDE 365
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 200/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP++ L+K+ + + L+ K ++++ P
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGKALNWISKYP 85
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 86 SCFQFHQDHV----------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K GFP+D+L+ +V +YP+ FR+ G S + EL+ WNP+FA S +E
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E R++ + YVSPY D L + +EM
Sbjct: 196 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFREFELVPYVSPYSDPRGLVEGSKEM 246
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 247 EKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTV 306
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D DPL+ +K+KF E+M+EG + + RL + +++ L +V E
Sbjct: 307 LLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKRRNKGLPLNRVDE 365
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 199/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP++ L+K+ + + L+ K ++++ P
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGKALNWISKYP 85
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 86 SCFQFHQDHV----------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K GFP+D+L+ +V +YP+ FR+ G S + EL+ WNP+FA S +E
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E ++ + YVSPY D L + +EM
Sbjct: 196 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFHEFELVPYVSPYSDPRGLVEGSKEM 246
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 247 EKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTV 306
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D DPL+ +K+KF E+M+EG + + RL + K++ L +V E
Sbjct: 307 LLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDE 365
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 199/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP++ L+K+ + + L+ K ++++ P
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGKALNWISKYP 85
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 86 SCFQFHQDHV----------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K GFP+D+L+ +V +YP+ FR+ G S + EL+ WNP+FA S +E
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E ++ + YVSPY D L + +EM
Sbjct: 196 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFHEFELVPYVSPYSDPRGLVEGSKEM 246
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 247 EKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTV 306
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D DPL+ +K+KF E+M+EG + + RL + K++ L +V E
Sbjct: 307 LLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDE 365
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 199/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP++ L+K+ + + L+ K ++++ P
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGKALNWISKYP 85
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 86 SCFQFHQDHV----------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K GFP+D+L+ +V +YP+ FR+ G S + EL+ WNP+FA S +E
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E ++ + YVSPY D L + +EM
Sbjct: 196 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFHEFELVPYVSPYSDPRGLVEGSKEM 246
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 247 EKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTV 306
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D DPL+ +K+KF E+M+EG + + RL + K++ L +V E
Sbjct: 307 LLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDE 365
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 199/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP++ L+K+ + + L+ K ++++ P
Sbjct: 26 KKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQTLQKKFKTLDLQGKALNWISKYP 85
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 86 SCFQFHQDHV----------LLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLSLNNCL 135
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K GFP+D+L+ +V +YP+ FR+ G S + EL+ WNP+FA S +E
Sbjct: 136 NVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 195
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E ++ + YVSPY D L + +EM
Sbjct: 196 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFHEFELVPYVSPYSDPRGLVEGSKEM 246
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 247 EKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTV 306
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D DPL+ +K+KF E+M+EG + + RL + K++ L +V E
Sbjct: 307 LLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDE 365
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 199/359 (55%), Gaps = 20/359 (5%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP+ L+K+ + + L+ K ++++ P
Sbjct: 28 KKDPYLESALSRNKRWIINNQIKNIILRYPNNQIPILTLQKKFKTLDLQGKALNWISKYP 87
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 88 SCFQFHQDHV----------LLTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLNNCL 137
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFL-ELVTWNPEFAKSVIER 214
+ K+ +K FG P+D+L+ +V +Y + FR+ G S + EL+ WNP+FA S +E
Sbjct: 138 NVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 197
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E R++ + YVSPY D +L + +EM
Sbjct: 198 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFREFELVPYVSPYSDPRRLVEGSKEM 248
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F E+ + + +H GIFY+S K I T
Sbjct: 249 EKRNLGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHHGIFYVSNKYRIYTV 308
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
+LRE Y G +L+D +PL+ +K+KF ++M+EG + + RL + K++ L +V E
Sbjct: 309 LLREGYVGSQLVDKNPLVAVKEKFGKIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDE 367
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 179/349 (51%), Gaps = 12/349 (3%)
Query: 25 TRSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLK 84
+R I+ +++ W K++++D ID + K + + + + ++ + L
Sbjct: 22 SRGIAKVRLKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTSFLTAKTFSDWQKLLGLT 81
Query: 85 VKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLC 144
V V F+ + P LF ++ P+ + R++D + +E+ ++ V+E IV +
Sbjct: 82 VPVLRFIRRYPTLF---HEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERFS 138
Query: 145 KLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWN 204
K+LMM K + V L +K + G P+ F L+P+YP+ F+ G G S + LV W
Sbjct: 139 KVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVK-AGNGVSAIRLVDWC 197
Query: 205 PEFAKSVIERRAEEESRCTGIRVRP--------NFNVKLPRGFVLKKEMREWVRDWLELE 256
EFA S +++ + ES + R F ++ PRG+ +K++R W+ ++ +L
Sbjct: 198 DEFAVSALQKSNQCESENASDQYRDFKRGKTALVFPMRFPRGYGGQKKVRFWMDEFQKLP 257
Query: 257 YVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAF 316
Y+SPY D S++D MEK +GV HE LSL L+K+ L +E + F+ F
Sbjct: 258 YISPYADSSKIDPKSDLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPHKFTRIF 317
Query: 317 TRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEG 365
TR+ GIFY+SLK T LRE Y KL+D PL + +DKF +M G
Sbjct: 318 TRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLARHRDKFYHVMRTG 366
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 185/344 (53%), Gaps = 18/344 (5%)
Query: 30 SLKVVWRKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRL--KVKV 87
S V RK+ D I DK+ K ++V K ++++P +V+ L+ L K R + L K K+
Sbjct: 81 SAAVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKL 140
Query: 88 ETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLL 147
L + P +F++ D ++F S+ + +LEE RV E ++V+KL KLL
Sbjct: 141 IVILRRFPGVFEIVED----GCYSLKFKMTSEAEKLYLEE-LRVRNEMEDVVVTKLRKLL 195
Query: 148 MMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEF 207
MM +K + +K+ H+ + G P +F + RYPE+F++ + E LEL W+P
Sbjct: 196 MMPLEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKV--VQTERGPALELTHWDPHL 253
Query: 208 AKSVIERRAEE------ESRCTGIRVRPNFN-VKLPRGFVLKK-EMREWVRDWLELEYVS 259
A S E AEE E + I P FN VKLP+G L K EMR+ + + ++ Y+S
Sbjct: 254 AVSAAELSAEENRIREVEEQNLIIDRAPKFNRVKLPKGLSLSKGEMRK-IMQFRDIPYIS 312
Query: 260 PYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRH 319
PY D S + E EK GV HE+LSL+L KR V F +E+RFS RH
Sbjct: 313 PYSDFSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRH 372
Query: 320 SGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELME 363
+FY+SLKG ++ LREAY +L+D D LL +K+K L++
Sbjct: 373 PDMFYISLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVD 416
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 178/346 (51%), Gaps = 5/346 (1%)
Query: 27 SISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRL--K 84
S+ ++K+ W KD+ +D + + K +V + + +P+ L + R ++ L +
Sbjct: 29 SLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGLPDE 88
Query: 85 VKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLC 144
+K+ F+ + P +F Y + PV +S + EE + N +LC
Sbjct: 89 IKLAVFIRRYPNVFVESYS-LDSGGSPVPCFGLSSEAMKIHREEVDILRENSLEFRDRLC 147
Query: 145 KLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWN 204
KLLM+++D ++ + +K + G P D+ V +PE F LP + + L+L+ W+
Sbjct: 148 KLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLP-DVRVGLKLLFWD 206
Query: 205 PEFAKSVIERRAEEESRCTGIRVRP-NFNVKLPRGFVLKKEMREWVRDWLELEYVSPYED 263
+ A S +E+ A + + I+ F V RGF +K++ EW+R+W +L Y SPY D
Sbjct: 207 DKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQKLPYTSPYAD 266
Query: 264 VSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIF 323
S LD EK +GVFHELL L+L+K+ + F+ AF RH GIF
Sbjct: 267 ASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAFERHPGIF 326
Query: 324 YMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQR 369
Y+S K +T VLREAY+G +L+ PL++I+++ L+++G R
Sbjct: 327 YISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKKGLLDR 372
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 178/346 (51%), Gaps = 5/346 (1%)
Query: 27 SISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRL--K 84
S+ ++K+ W KD+ +D + + K +V + + +P+ L + R ++ L +
Sbjct: 29 SLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRGQLGLPDE 88
Query: 85 VKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLC 144
+K+ F+ + P +F Y + PV +S + EE + N +LC
Sbjct: 89 IKLAVFIRRYPNVFVESYS-LDSGGSPVPCFGLSSEAMKIHREEVDILRENSLEFRDRLC 147
Query: 145 KLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWN 204
KLLM+++D ++ + +K + G P D+ V +PE F LP + + L+L+ W+
Sbjct: 148 KLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLP-DVRVGLKLLFWD 206
Query: 205 PEFAKSVIERRAEEESRCTGIRVRP-NFNVKLPRGFVLKKEMREWVRDWLELEYVSPYED 263
+ A S +E+ A + + I+ F V RGF +K++ EW+R+W +L Y SPY D
Sbjct: 207 DKLAVSELEKNASLQQQVEDIKNGTLAFPVSFTRGFGMKRKSMEWLREWQKLPYTSPYAD 266
Query: 264 VSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIF 323
S LD EK +GVFHELL L+L+K+ + F+ AF RH GIF
Sbjct: 267 ASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFTKAFERHPGIF 326
Query: 324 YMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQR 369
Y+S K +T VLREAY+G +L+ PL++I+++ L+++G R
Sbjct: 327 YISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKKGLLDR 372
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 176/319 (55%), Gaps = 23/319 (7%)
Query: 76 KRRERMRLKVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVN 135
K R ++R+ + ++++ P F + D + ++ R+ + + EE+ +
Sbjct: 26 KNRPKLRISL---NWISKYPSCFQFHQDHV----------LLTKRMMELVHEEQSLKDSL 72
Query: 136 EPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGK 195
E + V +L KLLM S + ++ K+ +K GFP+D+L+ +V +YP+ FR+ G
Sbjct: 73 ESVFVPRLAKLLMFSLNNCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRIS 132
Query: 196 SFL-ELVTWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLE 254
S + EL+ WNP+F+ S + A + G+ V NF+ LP +V + E R++
Sbjct: 133 SMVVELMKWNPDFSVSEVAALAMK----NGVEV--NFSYCLPSSWV---KSLEKFREFEL 183
Query: 255 LEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSS 314
+ YVSPY D L + +EMEK +G+ HELLSL+L+K++ + LG F E+ + +
Sbjct: 184 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 243
Query: 315 AFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELR 374
+H GIFY+S K I T +LRE Y G +L+D DPL+ +K+KF E+M+EG + + R
Sbjct: 244 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQRRR 303
Query: 375 LKQEKIKKDMELLATKVTE 393
L + +++ L +V E
Sbjct: 304 LVNIEKRRNKGLPLNRVDE 322
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 174/345 (50%), Gaps = 18/345 (5%)
Query: 39 QALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLK--VKVETFLNQNPF 96
L+ A + K + + +++ + EP VIP+R L R+++ L ++ FL + P
Sbjct: 40 HELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPK 99
Query: 97 LFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVS 156
LF++Y DR V + ++ + +EE KRV NE + +LLMMS DK V
Sbjct: 100 LFELYKDR-----NGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQ 154
Query: 157 ADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRA 216
DK+ H +R+FG P DF V +YP+ FR+ + FLELV+WN E+A + IE++
Sbjct: 155 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKN 214
Query: 217 E-------EESRCTGIRVRPNFNVKLPRGFV-LKKEMREWVRDWLELEYVSPYEDVSQLD 268
+ E G+ P F +K P F + E ++ + E Y+SPY D L
Sbjct: 215 KMILEGVTETEHTPGLLSLP-FPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGLK 273
Query: 269 QACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLK 328
E +K + V HELLS ++ KR+ L F E +H GIFY+S +
Sbjct: 274 PGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSER 333
Query: 329 GGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEEL 373
G + L EAY+G +LI+ PL ++K + L+ G+R R+++
Sbjct: 334 GKRFSVFLTEAYEGSELIEKSPLFLWREKLLSLV--GYRGRKKKF 376
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 188/359 (52%), Gaps = 45/359 (12%)
Query: 36 RKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+KD L+ A+ +KR+ ++ +L P IP+ L+K+ + + L+ K ++++ P
Sbjct: 28 KKDPYLESALSRNKRWIINNQIKNIILRYPNNQIPILTLQKKFKTLDLQGKALNWISKYP 87
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
F + D + ++ R+ + + EE+ + E + V +L KLLM+S + +
Sbjct: 88 SCFQFHQDHV----------LLTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLNNCL 137
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSF-LELVTWNPEFAKSVIER 214
+ K+ +K FG P+D+L+ +V +Y + FR+ G S +EL+ WNP+FA S +E
Sbjct: 138 NVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSEVEA 197
Query: 215 RAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACREM 274
A + G+ V NF+ LP +V + E R++ + YVSPY D +L + +EM
Sbjct: 198 LAMK----NGVEV--NFSCCLPSSWV---KSLEKFREFELVPYVSPYSDPRRLVEGSKEM 248
Query: 275 EKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETA 334
EK +G+ HELLSL+L+K++ + LG F G+F+
Sbjct: 249 EKRNLGLVHELLSLTLWKKISIMKLGHF----------------KKGVFF---------C 283
Query: 335 VLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEELRLKQEKIKKDMELLATKVTE 393
++RE Y G +L+D +PL+ +K+KF ++M+EG + + RL + K++ L +V E
Sbjct: 284 LIREGYVGSQLVDKNPLVAVKEKFGKIMQEGLHEYNQRRRLVNIEKKRNKGLPLNRVDE 342
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 184/333 (55%), Gaps = 20/333 (6%)
Query: 37 KDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLNQNPF 96
+D+ LD A++ +K K + ++ + NEP + +P+ +++ R + L + F+ + P
Sbjct: 32 RDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPISIIKQSRS-LNLPFRPIEFIRKYPS 90
Query: 97 LFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPL----IVSKLCKLLMMSKD 152
+F+ +Y+ EP ++++ + +EK F V + + ++ KLLM++K
Sbjct: 91 VFEEFYNN-GCTFEP--HVKLTAKAIDLNADEK--FLVASDVFKKDVAVRVLKLLMIAKG 145
Query: 153 KVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVI 212
+ + +K + G P+D++ ++P +P++FR+ G+ + + LELV W+ + + S +
Sbjct: 146 NKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGV--DNNAVLELVCWSKKHSVSFL 203
Query: 213 ERRAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACR 272
E++ ++++ G + F V+ GF + K+ +WV++W L YVSPYE+ L +
Sbjct: 204 EKKYGDKAKGQGKEL--GFPVQFSTGFEMDKKYEKWVKEWNGLRYVSPYENGVNLSGSSE 261
Query: 273 EMEKWRIGVFHELLSLSLYKRV---PVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKG 329
E +KW +GV HE+L+L + K+ V ++G++ ++ F +H GIFY+S K
Sbjct: 262 ESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLG---LASRFKRVILQHPGIFYVSSKN 318
Query: 330 GIETAVLREAYDGDKLIDLDPLLQIKDKFVELM 362
+ T VLR+ Y L++ +P ++ + +++ LM
Sbjct: 319 RMYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLM 351
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 170/351 (48%), Gaps = 19/351 (5%)
Query: 26 RSISSLKVVWRKDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKV 85
R+ + +V W +D LD A+ +K K I + +++ P + + L + + L +
Sbjct: 15 RTFVNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPM 74
Query: 86 KVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFT--VNEPLIVSKL 143
+ + +F + + P P ++++ + +EE V N+ +L
Sbjct: 75 ITIKLVEKYHHVFMQF--QPSPGLPPR--IKLTAQALALHKEEMEVHNSRTNQEDAAQRL 130
Query: 144 CKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGL--PGEGKSFL--E 199
+LLM++ + + +K + G P+D++ L+ YP+YF + + P GK L E
Sbjct: 131 ARLLMLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALE 190
Query: 200 LVTWNPEFAKSVIERRA-----EEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLE 254
LV+W E + S +E+R + + R I+ F + LP+ F L+K ++ WV W
Sbjct: 191 LVSWRKELSVSELEKRVMGFNYDADKRRHDIQ----FPMFLPKSFALEKRVKTWVEGWQT 246
Query: 255 LEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSS 314
L Y+SPYE+ LD + EKW + + HELLSL + K+ L + + + F
Sbjct: 247 LPYISPYENAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGSRFKK 306
Query: 315 AFTRHSGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEG 365
A H GIFY+S K +TAVLREAY + L+ P++ + ++ LM +
Sbjct: 307 ALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPVMGTRYWYIHLMTKA 357
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 166/337 (49%), Gaps = 15/337 (4%)
Query: 37 KDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRL-KVKVETFLNQNP 95
+D D ++ +K+ ++ ++ +L+EP Q IP+ LE + R+ + + F+ +
Sbjct: 50 RDHGYDNYMEIEKKTRKVLKFQNLILSEPNQSIPISRLETQAHRIGFTRHEAIAFILKFL 109
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
+F+++ + + + F R++ + +E+E+ V++L K++MMS +
Sbjct: 110 HVFEIF----EHPVQRILFCRLTRKAILQIEQERLALADQVERAVTRLRKMIMMSNGLRL 165
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERR 215
+ + + G P+DF +V RYPE+FRL ++ELV ++P+ AK IE
Sbjct: 166 RLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETRNKYIELVEFDPKLAKCAIEDA 225
Query: 216 AEEESRCTGIR---VRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLD---- 268
E R G +R +F + P GF + K R + W L Y SPYEDV D
Sbjct: 226 RERVYRERGSEAEDIRFSFLIDFPPGFKISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSI 285
Query: 269 QACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLK 328
+A + MEK + HELLSL++ K++ + + F +H GIFY+S +
Sbjct: 286 EAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 345
Query: 329 GG---IETAVLREAYDGDKLIDLDPLLQIKDKFVELM 362
G + T LREAY +L++ + L + K VEL+
Sbjct: 346 GNHGKLHTVFLREAYSKGELVEPNDLYLARRKLVELV 382
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 159/337 (47%), Gaps = 15/337 (4%)
Query: 37 KDQALDRAIDNDKRYKQCIRVVKEVLNEP-GQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+D ++ +D K + I V +L P + + + +L +R+ L FL + P
Sbjct: 54 RDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLRKFP 113
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
+F++YY+ K +P F R++D +E + PL+V +L ++L MS K V
Sbjct: 114 HIFNIYYE--PSKLQP--FCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTV 169
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPE--FAKSVIE 213
+ V RE G P+DF ++ F+L + L+LV P F +V +
Sbjct: 170 PLRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKLVGDVPSSGFRAAVED 229
Query: 214 RR----AEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQ 269
R ++ES + +R +F + P G L K R V++W L Y+ PYE VS+ +
Sbjct: 230 WRVVECCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKK 289
Query: 270 ACRE----MEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYM 325
+ MEK + + HE +SL++ K V V + +F + F H GIFY+
Sbjct: 290 TSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYL 349
Query: 326 SLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELM 362
S KG T LREAY+ LI +P+ + + ++L+
Sbjct: 350 STKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLV 386
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 16/295 (5%)
Query: 39 QALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLK--VKVETFLNQNPF 96
L+ A + K + + +++ + EP VIP+R L R+++ L ++ FL + P
Sbjct: 47 HELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPK 106
Query: 97 LFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVS 156
LF++Y DR V + ++ + +EE KRV NE + +LLMMS DK V
Sbjct: 107 LFELYKDR-----NGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQ 161
Query: 157 ADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERR- 215
DK+ H +R+FG P DF V +YP+ FR+ + FLELV+WN E+A + IE++
Sbjct: 162 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKN 221
Query: 216 ------AEEESRCTGIRVRPNFNVKLPRGFV-LKKEMREWVRDWLELEYVSPYEDVSQLD 268
E G+ P F +K P F + E ++ + E Y+SPY D L
Sbjct: 222 KMIMEGVTETEHTPGLLSLP-FPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGLK 280
Query: 269 QACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIF 323
E +K + V HELLS ++ KR+ L F E +H GIF
Sbjct: 281 PGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 162/342 (47%), Gaps = 53/342 (15%)
Query: 39 QALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLK--VKVETFLNQNPF 96
L+ A + K + + +++ + EP VIP+R L R+++ L ++ FL + P
Sbjct: 17 HELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPK 76
Query: 97 LFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVS 156
LF++Y DR V + ++ + +EE KRV NE + +LLMMS DK V
Sbjct: 77 LFELYKDR-----NGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQ 131
Query: 157 ADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRA 216
DK+ H +R+FG P DF V +YP+ FR+ + FLELV+WN E+A + IE++
Sbjct: 132 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKN 191
Query: 217 E-------EESRCTGIRVRPNFNVKLPRGFV-LKKEMREWVRDWLELEYVSPYEDVSQLD 268
+ E G+ P F +K P F + E ++ + E Y+SPY D L
Sbjct: 192 KMIMEGVTETEHTPGLLSLP-FPLKFPANFKRVHSYYGEKIKMFQERTYLSPYADAKGLK 250
Query: 269 QACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLK 328
E +K + V HELLS ++ KR GK RFS
Sbjct: 251 PGSLEFDKRAVAVMHELLSFTVEKR------GK-----RFS------------------- 280
Query: 329 GGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQ 370
L EAY+G +LI+ PL ++K + L+ G+R R+
Sbjct: 281 -----VFLTEAYEGSELIEKSPLFLWREKLLSLV--GYRGRK 315
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 165/344 (47%), Gaps = 19/344 (5%)
Query: 37 KDQALDRAIDNDKRYKQCIRVVKEVLNEP-GQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+D D+ + K+ ++ + N G + L+ + + + L V V +FL + P
Sbjct: 48 RDTHFDKLTTHFKKLSLVLKTRNLISNRKRGSFVSLQLMSRWKNITGLNVTVTSFLQKYP 107
Query: 96 FLFDVYYDRIKPKTEPVR---FLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKD 152
+F ++ P R R++ ++++ + E+ V +E +V ++ KLLMMS +
Sbjct: 108 HVFYLF-------VHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMSVN 160
Query: 153 KVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVI 212
+ L ++RE G P DF ++ RY + FRL L + LV W+ E + +
Sbjct: 161 GTLHLHALRLIRRELGLPCDFRESILGRYSDEFRLVDL-----EIVALVGWDDELGMARV 215
Query: 213 ERRAEEESR---CTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQ 269
E E E R + + F + P GF +++ RE ++ W L Y PYE +
Sbjct: 216 EEWREREYREKWLSEFETKFAFPINFPTGFKIERGFREKLKGWQRLSYTKPYERKNVKCG 275
Query: 270 ACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKG 329
+ EK + V HELLSL++ K V V L F ++ RH GIFY+S KG
Sbjct: 276 GVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPGIFYISTKG 335
Query: 330 GIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEGWRQRQEEL 373
+T LREAY+ LI+ +P+ +++ +EL+ G R+ ++ L
Sbjct: 336 NAQTVFLREAYEKGGLIEPNPVYEVRRNMLELVLLGRRKTKQLL 379
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 168/346 (48%), Gaps = 33/346 (9%)
Query: 35 WRKDQALD--RAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKVKVETFLN 92
W+KD D I + + K I + + +P IP+ + KR ++ + +KV FL
Sbjct: 51 WKKDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNGCIPISSVSKRGLQLDVPMKVARFLR 110
Query: 93 QNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKD 152
Q P +F+ + PK F R++ + +EKRV+ + + S+L K+++M+K+
Sbjct: 111 QYPSIFEEF---TGPKYNHPWF-RLTPEAAEIDRDEKRVYEESREELRSRLKKMILMTKE 166
Query: 153 KVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLT----GLPGEGKSFLELVTWNPEFA 208
V+ + ++ G P+DFL + FR GL G L + E
Sbjct: 167 NVLPLKIIQGMQWYLGLPHDFLQHHEQNLDDSFRFVEMEDGLKG-------LAIESRERV 219
Query: 209 KSVIERRAEEE------SRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYE 262
SV+E A ++ S+ I P F K R +K ++ W+ ++ +L Y+SPY+
Sbjct: 220 YSVMEENAMKKGMYYDGSQTEAIEF-PFFPSKALR---MKTKIENWLHEFQKLPYISPYD 275
Query: 263 DVSQLDQACREMEKWRIGVFHELLSLSL---YKRVPVPILGKFCDEYRFSNAFSSAFTRH 319
D S LD EK IGV HELLSL + +R + L K+ + F AF RH
Sbjct: 276 DFSNLDPNSDIAEKRLIGVLHELLSLFIDHSAERRKLLCLKKY---FGFPQKVHRAFERH 332
Query: 320 SGIFYMSLKGGIETAVLREAYDGDKLIDLDPLLQIKDKFVELMEEG 365
+FYMS++ T +L+EAY + I+ PLL ++ ++++LM+E
Sbjct: 333 PHMFYMSMRNKTCTVILKEAYCNELAIENHPLLSVRKRYIKLMKES 378
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 149/313 (47%), Gaps = 15/313 (4%)
Query: 61 VLNEPGQVIPLRYLEKRRERMRL-KVKVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSD 119
+L+E Q IP+ LE R+ + + F+ + P++F+++ + + + F R++
Sbjct: 39 ILSELNQSIPIPRLETLAHRIGFTRHEASAFILKFPYVFEIFEHLV----QRILFCRLTR 94
Query: 120 RLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVP 179
+ +E+E+ V+ L K++MMS + + + + G +DF +V
Sbjct: 95 KTILQIEQERLALADQVGRTVTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEYLVVL 154
Query: 180 RYPEYFRLTGLPGEGKSFLELVTWNPEFAKSVIERRAEEESRCTGIR---VRPNFNVKLP 236
RYPE+FRL ++ELV ++P+ A IE E R G +R +F +
Sbjct: 155 RYPEFFRLVDAKETRNKYIELVEFDPKLATCAIEDARERVYRERGSEAEDIRFSFLIDFL 214
Query: 237 RGFVLKKEMREWVRDWLELEYVSPYEDVSQLD----QACREMEKWRIGVFHELLSLSLYK 292
GF + K R + W L Y SPYEDV D +A + MEK + HELLSL++ K
Sbjct: 215 PGFKISKYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVATIHELLSLTVEK 274
Query: 293 RVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGG---IETAVLREAYDGDKLIDLD 349
++ + + F +H GIFY+S +G + T LREAY +L++ +
Sbjct: 275 KITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRKGELVEPN 334
Query: 350 PLLQIKDKFVELM 362
L + K E++
Sbjct: 335 DLYLARRKLAEVV 347
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 31/333 (9%)
Query: 37 KDQALDRAIDNDKRYKQCIRVVKEVLNEP-GQVIPLRYLEKRRERMRLKVKVETFLNQNP 95
+D ++ +D K + I V +L P + + + +L +R+ L FL + P
Sbjct: 54 RDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAFLRKFP 113
Query: 96 FLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVV 155
+F++YY+ K +P F R++D +E + PL+V +L ++L MS K V
Sbjct: 114 HIFNIYYE--PSKLQP--FCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKTV 169
Query: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTG-LPGEG-KSFLELVTWNPEFAKSVIE 213
+ L D + +L G +P G ++ +E W V+E
Sbjct: 170 PLRAVFK-----------LCDADEQNTHLLKLVGDVPSSGFRAAVE--DWR------VVE 210
Query: 214 RRAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQLDQACRE 273
++ES + +R +F + P G L K R V++W L Y+ PYE VS+ + +
Sbjct: 211 C-CKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKA 269
Query: 274 ----MEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKG 329
MEK + + HE +SL++ K V V + +F + F H GIFY+S KG
Sbjct: 270 GMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKG 329
Query: 330 GIETAVLREAYDGDKLIDLDPLLQIKDKFVELM 362
T LREAY+ LI +P+ + + ++L+
Sbjct: 330 KRHTVFLREAYERGCLIHPNPVYDARRRLLDLV 362
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 129/277 (46%), Gaps = 13/277 (4%)
Query: 86 KVETFLNQNPFLFDVYYDRIKPKTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCK 145
K+ + Q+P LF Y T+ + +D + + L EEK + E V K+ K
Sbjct: 110 KIAKSIQQHPPLFLTYR-----HTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRK 164
Query: 146 LLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKS----FLELV 201
LLMMS+ +S K+ HV+ FG P+DF D V +YP YFR+ + LELV
Sbjct: 165 LLMMSRFHRISLAKIHHVRNLFGIPDDFR-DRVEKYPNYFRIVDDKNKDDGKKVRVLELV 223
Query: 202 TWNPEFAKSVIERRAEEESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLELEYVSPY 261
W+P A S IE+ E + + F VK + L E + L VSPY
Sbjct: 224 NWDPLLAVSAIEK--EFMVNEDDAKRKFTFPVKHGKDLELGIEDERKMNLLNALPLVSPY 281
Query: 262 EDVSQLDQACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSG 321
D ++ D E EK+R+G+ HE LSL+L KR + L +F +E+ + +
Sbjct: 282 SDGAKFDVWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPR 341
Query: 322 IFYMSLKGGIETAVLREAYDGDK-LIDLDPLLQIKDK 357
FY++ L+E YD + LI DP + +K
Sbjct: 342 AFYLAGTEMNWVVFLKEGYDRNGVLIHKDPQVVFNEK 378
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 165/337 (48%), Gaps = 17/337 (5%)
Query: 37 KDQALDRAIDNDKRYKQCIRVVKEVLNEPGQVIPLRYLEKRRERMRLKV--KVETFLNQN 94
+D+ LDR + R + ++ +L++P +P++ L K R + L + + +++
Sbjct: 58 RDRTLDRHVVMRNRIRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRY 117
Query: 95 PFLFDVYYDRIKP------KTEPVRFLRVSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLM 148
P +F+++ P K P +R++ EE + + ++ +KL KLLM
Sbjct: 118 PSIFELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLM 177
Query: 149 MSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVTWNPEFA 208
+S + + KL+H+ + G P +F L +P+ F++ G++ LELV+W+ A
Sbjct: 178 LSSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDT-SYGRA-LELVSWDTNLA 235
Query: 209 KSVIERRAEEESRCTGIRVRP-NF-NVKLPRGFVLKKEMREWVRDWLELEYVSPYEDVSQ 266
K + R E I RP F ++L +G LK+ R+++ + E+ V PY + ++
Sbjct: 236 KPLPPR---ESHSLDLIVDRPLKFKQLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNPAE 292
Query: 267 LD-QACREMEKWRIGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYM 325
+ E EK V E+L +++ KR + L F E+ N RH +FY
Sbjct: 293 SSTKESIEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELFYT 352
Query: 326 SLKGGIETAVLREAYD-GDKLIDLDPLLQIKDKFVEL 361
SLKG ++ L E +D L++ D +L ++DK+++L
Sbjct: 353 SLKGQRDSVFLVERFDEKGNLLEKDEVLALQDKWMDL 389
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 140 VSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGL--PGEGKSF 197
+S+L L M++ + +KL K + G P+D++ L+ YP+YF + + P GK
Sbjct: 84 LSRLLMLAGMARFPIYVIEKL---KWDMGLPHDYVTTLLAHYPDYFDVCVVEDPLSGKEV 140
Query: 198 L--ELVTWNPEFAKSVIERRAEE-ESRCTGIRVRPNFNVKLPRGFVLKKEMREWVRDWLE 254
L E V W E + S +E+R R F + LP+ F L+K ++ WV W
Sbjct: 141 LALEFVLWRKELSVSELEKRVMGFNYGADNRRYDIQFPMFLPKSFALEKRVKTWVEGWQT 200
Query: 255 LEYVSPYEDVSQLDQACREMEKWRIGVFHELLSLSLYK 292
L Y+SPYE+ LD + EKW + + HELLSL + K
Sbjct: 201 LPYISPYENAFHLDSNSDQAEKWSVAILHELLSLLVSK 238
>Medtr2g017885.1 | plant organelle RNA recognition domain protein |
HC | chr2:5564628-5564353 | 20130731
Length = 91
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 123 QFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYP 182
+ + EE+ EP+ V L KLLM+S + SA K+ +K GFP+D+L+ +V +YP
Sbjct: 2 ELVHEEQSFKDSLEPVFVQHLAKLLMLSLNNCFSAIKINEIKNSLGFPDDYLIGIVAKYP 61
Query: 183 EYFRLTGLPGEGKSF-LELVTWNPEFAKS 210
+ FR+ G S +EL+ WNP+FA S
Sbjct: 62 DLFRIRNESGRRSSMVVELMKWNPDFAVS 90
>Medtr7g009010.1 | plant organelle RNA recognition domain protein |
LC | chr7:1887874-1884516 | 20130731
Length = 142
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%)
Query: 117 VSDRLRQFLEEEKRVFTVNEPLIVSKLCKLLMMSKDKVVSADKLLHVKREFGFPNDFLVD 176
++ R+ + + EE+ + E + V +L KL M+S + ++A K+ +K GFP+D+L+
Sbjct: 56 LTKRMIELVHEEQSLKDSLESVFVQRLAKLFMLSLNNCLNAMKINEIKNSLGFPDDYLIQ 115
Query: 177 LVPRYPEYFRLTGLPG 192
+V +YP+ FR+ G
Sbjct: 116 IVAKYPDLFRIRNESG 131