Miyakogusa Predicted Gene

Lj5g3v0962370.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0962370.1 Non Characterized Hit- tr|C4JBA6|C4JBA6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,67.61,1e-16,seg,NULL;
coiled-coil,NULL; PGBD-like,Peptidoglycan binding-like; no
description,Peptidoglycan bindi,CUFF.54343.1
         (390 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g072690.2 | peptidoglycan-binding domain protein | HC | ch...   317   1e-86
Medtr1g072690.1 | peptidoglycan-binding domain protein | HC | ch...   317   1e-86

>Medtr1g072690.2 | peptidoglycan-binding domain protein | HC |
           chr1:32286959-32283593 | 20130731
          Length = 392

 Score =  317 bits (812), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/212 (74%), Positives = 174/212 (82%), Gaps = 2/212 (0%)

Query: 175 TLRVGSEGEEVRQMQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTS 234
            LR GSEGEEV+++QEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQ+SLG PEDGIMTS
Sbjct: 179 VLRTGSEGEEVQKLQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQSSLGIPEDGIMTS 238

Query: 235 ELIERLYLEIATPTNDKGSTNENKISTTVLRKESENGSAVASVTEISDIQQKVVGGGVKE 294
            L+ERLYL+I T   D  S NE K S +VL KE ENG+AVASVTEIS++QQKVVG   +E
Sbjct: 239 HLLERLYLDIRT--TDIDSVNETKKSASVLPKEVENGAAVASVTEISEVQQKVVGEVDQE 296

Query: 295 TEASRPRVFLLGENRWEDSSKLGASDGVDRSKNKDGTTKCVQCRGEGRLLCTECDGGGEP 354
           TEAS PRVFLLGENRWE+ S+L     VDR KNKDGT +C+QC G G LLCTECDG GEP
Sbjct: 297 TEASHPRVFLLGENRWEEPSRLSTKVRVDRGKNKDGTMRCLQCSGLGVLLCTECDGSGEP 356

Query: 355 NIEPQFMELVEDGTKCPYCEGLGYTPCDLCGG 386
           NIEPQFME V + TKCPYCEGLG+  CDLC G
Sbjct: 357 NIEPQFMEWVGEDTKCPYCEGLGHITCDLCRG 388



 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 3   SSSLVPFTVTATILFNRTLSLP-------KPHFISLSYKSKPSSVCYCSNSDREDXXXXX 55
           S+  VP TVT ++  N TLS P       KPHF S  + S  +   +CS  DRE+     
Sbjct: 4   SAPTVPITVTVSV--NSTLSFPTKTLPFLKPHFPSYKFNSLTT---HCSIPDREEHRWLR 58

Query: 56  XXXXXXXXXXXXXXXXXXXTRDREELLREISELKLQIQTLEHR 98
                               R+R ELLREISELKLQIQ+LEHR
Sbjct: 59  EEQRWLREEQRWIREENRWNRERAELLREISELKLQIQSLEHR 101


>Medtr1g072690.1 | peptidoglycan-binding domain protein | HC |
           chr1:32286958-32283563 | 20130731
          Length = 392

 Score =  317 bits (812), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/212 (74%), Positives = 174/212 (82%), Gaps = 2/212 (0%)

Query: 175 TLRVGSEGEEVRQMQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTS 234
            LR GSEGEEV+++QEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQ+SLG PEDGIMTS
Sbjct: 179 VLRTGSEGEEVQKLQEALLKLGFYSGEEDMEFSSFSSGTERAVKTWQSSLGIPEDGIMTS 238

Query: 235 ELIERLYLEIATPTNDKGSTNENKISTTVLRKESENGSAVASVTEISDIQQKVVGGGVKE 294
            L+ERLYL+I T   D  S NE K S +VL KE ENG+AVASVTEIS++QQKVVG   +E
Sbjct: 239 HLLERLYLDIRT--TDIDSVNETKKSASVLPKEVENGAAVASVTEISEVQQKVVGEVDQE 296

Query: 295 TEASRPRVFLLGENRWEDSSKLGASDGVDRSKNKDGTTKCVQCRGEGRLLCTECDGGGEP 354
           TEAS PRVFLLGENRWE+ S+L     VDR KNKDGT +C+QC G G LLCTECDG GEP
Sbjct: 297 TEASHPRVFLLGENRWEEPSRLSTKVRVDRGKNKDGTMRCLQCSGLGVLLCTECDGSGEP 356

Query: 355 NIEPQFMELVEDGTKCPYCEGLGYTPCDLCGG 386
           NIEPQFME V + TKCPYCEGLG+  CDLC G
Sbjct: 357 NIEPQFMEWVGEDTKCPYCEGLGHITCDLCRG 388



 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 51/103 (49%), Gaps = 12/103 (11%)

Query: 3   SSSLVPFTVTATILFNRTLSLP-------KPHFISLSYKSKPSSVCYCSNSDREDXXXXX 55
           S+  VP TVT ++  N TLS P       KPHF S  + S  +   +CS  DRE+     
Sbjct: 4   SAPTVPITVTVSV--NSTLSFPTKTLPFLKPHFPSYKFNSLTT---HCSIPDREEHRWLR 58

Query: 56  XXXXXXXXXXXXXXXXXXXTRDREELLREISELKLQIQTLEHR 98
                               R+R ELLREISELKLQIQ+LEHR
Sbjct: 59  EEQRWLREEQRWIREENRWNRERAELLREISELKLQIQSLEHR 101