Miyakogusa Predicted Gene

Lj5g3v0931390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0931390.1 tr|F2E4F7|F2E4F7_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,43.9,4e-19,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.54349.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g051245.1 | hypothetical protein | HC | chr1:20040591-2003...   201   2e-52

>Medtr1g051245.1 | hypothetical protein | HC |
           chr1:20040591-20034586 | 20130731
          Length = 300

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 112/152 (73%), Gaps = 1/152 (0%)

Query: 1   MFSNDVSSLNTSMHAVVEMSAHANRIAXXXXXXXXXXXXMGLIQGINGGMIKSEPGYSGS 60
           +F+N  SSLNT +  + +MSA  NRI+            +GLIQGINGGMIKSEPGYSGS
Sbjct: 144 VFNNGGSSLNTRVRDLAQMSARGNRISSPPSMLSSQNSSLGLIQGINGGMIKSEPGYSGS 203

Query: 61  PSYIFGPDSTVLDACPTIGDGXXXXXXXXXXXXXXMNGALLDLDISSFGVLGQISRNLSL 120
           P YIFGPD TVL+ACPTIGD               MNGALLD DISSFGVLGQISRNLSL
Sbjct: 204 PPYIFGPDGTVLEACPTIGDAAVTSFNSVDSNSHSMNGALLDPDISSFGVLGQISRNLSL 263

Query: 121 SDLTADFSQSSDIMESYPRCPYL-ATNENFLE 151
           SDLTADFSQSSDIMESYPRCPYL  TNENFL+
Sbjct: 264 SDLTADFSQSSDIMESYPRCPYLGTTNENFLQ 295