Miyakogusa Predicted Gene

Lj5g3v0921030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0921030.1 Non Characterized Hit- tr|I1NY64|I1NY64_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,64.71,6e-17,zinc
finger,Zinc finger, CCCH-type; K homology RNA-binding domain,K
Homology domain; no description,,CUFF.54231.1
         (257 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g053960.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   247   8e-66
Medtr1g053960.2 | zinc finger C-x8-C-x5-C-x3-H type family prote...   173   1e-43
Medtr7g093130.2 | zinc finger C-x8-C-x5-C-x3-H type family prote...   171   9e-43
Medtr7g093130.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   170   1e-42
Medtr1g116940.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   153   2e-37

>Medtr1g053960.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:22947319-22950793 | 20130731
          Length = 293

 Score =  247 bits (630), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 144/306 (47%), Positives = 169/306 (55%), Gaps = 66/306 (21%)

Query: 1   MDFRKRGRSEVAVNGAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHHVP 60
           MD RKRGR + A+NG++KKTKQEM+S  TGVGSK +PCTKFFS AGCPFGE CHF HHVP
Sbjct: 1   MDARKRGRVDAALNGSVKKTKQEMDS--TGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVP 58

Query: 61  GGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXXXX--------------------- 99
           GGY  V QM+N    +  +   RNV APP ++                            
Sbjct: 59  GGYNAVAQMMN----LKPAAPPRNVAAPPPVSNNGSAQHAVKSRICNKFNSLEGCKFGDK 114

Query: 100 ----------------XXXXXRLIAPPGL--------------ASSFGXXXXXXXXXXXX 129
                                RL+AP  +               +SFG            
Sbjct: 115 CHFAHGEWELGKPFAPSVDDHRLMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEAS 174

Query: 130 XXGAIIGKGGENSKQICYQTGAKLSIREHESDPNLRNIELVGSFEQIENASNMVRELILT 189
             GAIIGKGG +SKQIC QTG K SIR+HE+DPNLRNIEL G+F+QI  ASNMV++L+LT
Sbjct: 175 LAGAIIGKGGVHSKQICRQTGVKFSIRDHETDPNLRNIELEGTFDQIAQASNMVKDLLLT 234

Query: 190 GSMLAPPKSAPAVRGAPPKSAPAVRGAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGA 249
            S+ APPKS                G P     N KTKLC+NFAKGSC +GERCHFAHGA
Sbjct: 235 LSVSAPPKST---------PGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGA 285

Query: 250 ANLRKL 255
           A LRKL
Sbjct: 286 AELRKL 291


>Medtr1g053960.2 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:22950110-22950793 | 20130731
          Length = 227

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/219 (47%), Positives = 125/219 (57%), Gaps = 28/219 (12%)

Query: 38  CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXX 97
           C KF S  GC FG+ CHF H   G +++ +         A S     ++AP  +      
Sbjct: 34  CNKFNSLEGCKFGDKCHFAH---GEWELGKPF-------APSVDDHRLMAPTNVGRMPG- 82

Query: 98  XXXXXXXRLIAPPGLA-SSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIR 156
                  R+ AP GL  +SFG              GAIIGKGG +SKQIC QTG K SIR
Sbjct: 83  -------RVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIR 135

Query: 157 EHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGA 216
           +HE+DPNLRNIEL G+F+QI  ASNMV++L+LT S+ APPKS                G 
Sbjct: 136 DHETDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKST---------PGAPAGGG 186

Query: 217 PTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRKL 255
           P     N KTKLC+NFAKGSC +GERCHFAHGAA LRKL
Sbjct: 187 PAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKL 225


>Medtr7g093130.2 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr7:36981723-36985923 | 20130731
          Length = 231

 Score =  171 bits (432), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 134/229 (58%), Gaps = 24/229 (10%)

Query: 26  SLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNV 85
           S  + V S++  C+KF +  GC FG+ CHF H   G +++ + +    S      +    
Sbjct: 27  SAPSAVKSRI--CSKFNTAEGCKFGDKCHFAH---GEWELGKPVAP--SFDDHRHNDHRH 79

Query: 86  VAPPVLNXXXXXXXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQI 145
           + PP                 + PP + +SFG              GAIIGKGG NSKQI
Sbjct: 80  MGPP--------NAGRFGGHRMEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQI 131

Query: 146 CYQTGAKLSIREHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGA 205
           C QTGAKL+IREHE DPNL+NIELVG+FEQI++ASNMV++L+LT  M APPKS       
Sbjct: 132 CRQTGAKLAIREHE-DPNLKNIELVGTFEQIKDASNMVKDLLLTLQMSAPPKSN------ 184

Query: 206 PPKSAPAVRGAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
             +  P   GAP    +N KTKLC+NFAKGSC +G+RCHFAHGA  LRK
Sbjct: 185 --QGPPGHHGAPGHHGNNLKTKLCENFAKGSCTFGDRCHFAHGAVELRK 231


>Medtr7g093130.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr7:36981685-36985930 | 20130731
          Length = 301

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 128/217 (58%), Gaps = 22/217 (10%)

Query: 38  CTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLNXXXXX 97
           C+KF +  GC FG+ CHF H   G +++ + +    S      +    + PP        
Sbjct: 107 CSKFNTAEGCKFGDKCHFAH---GEWELGKPVAP--SFDDHRHNDHRHMGPP-------- 153

Query: 98  XXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAKLSIRE 157
                    + PP + +SFG              GAIIGKGG NSKQIC QTGAKL+IRE
Sbjct: 154 NAGRFGGHRMEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIRE 213

Query: 158 HESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPAVRGAP 217
           HE DPNL+NIELVG+FEQI++ASNMV++L+LT  M APPKS         +  P   GAP
Sbjct: 214 HE-DPNLKNIELVGTFEQIKDASNMVKDLLLTLQMSAPPKSN--------QGPPGHHGAP 264

Query: 218 TPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
               +N KTKLC+NFAKGSC +G+RCHFAHGA  LRK
Sbjct: 265 GHHGNNLKTKLCENFAKGSCTFGDRCHFAHGAVELRK 301



 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 65/90 (72%), Gaps = 4/90 (4%)

Query: 1  MDFRKRGRSEVAVN--GAIKKTKQEMESLSTGVGSKLEPCTKFFSTAGCPFGEACHFRHH 58
          MD RKRGR E   N  G  KK++ EMESLSTGVGSK +PCTKFFST+GCPFGE+CHF HH
Sbjct: 1  MDMRKRGRPEHGFNNNGGFKKSRHEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHH 60

Query: 59 VPGGYKVVEQMLNKNSIVATSQSSRNVVAP 88
          VPGGY  V QM+  N   A   + RNV AP
Sbjct: 61 VPGGYNAVSQMM--NLTPAAPPAPRNVPAP 88


>Medtr1g116940.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:52813237-52812415 | 20130731
          Length = 258

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 115/222 (51%), Gaps = 27/222 (12%)

Query: 33  SKLEPCTKFFSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAPPVLN 92
           +K   C KF +  GC FG+ CHF H         E  L + ++ A   +         + 
Sbjct: 61  AKTRLCNKFNTAEGCKFGDKCHFAHG--------EWELGRPTVPAYEDTR-------AMG 105

Query: 93  XXXXXXXXXXXXRLIAPPGLASSFGXXXXXXXXXXXXXXGAIIGKGGENSKQICYQTGAK 152
                             G A+ FG              GAIIGK   NSKQIC+ TGAK
Sbjct: 106 QMQSSSVGGRIEPPPPAHGAAAGFGVSATATVSINATLAGAIIGKNDVNSKQICHITGAK 165

Query: 153 LSIREHESDPNLRNIELVGSFEQIENASNMVRELILTGSMLAPPKSAPAVRGAPPKSAPA 212
           LSIREH+SDPNLRNIEL GSF+QI+ AS MV +LIL  S         +V G P K+  +
Sbjct: 166 LSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVS---------SVSGPPGKNITS 216

Query: 213 VRGAPTPLRSNFKTKLCQNFAKGSCAYGERCHFAHGAANLRK 254
              AP    +NFKTKLC+NF KGSC +GERCHFAHG   LRK
Sbjct: 217 QTSAPA---NNFKTKLCENFTKGSCTFGERCHFAHGTDELRK 255



 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 30/47 (63%)

Query: 42 FSTAGCPFGEACHFRHHVPGGYKVVEQMLNKNSIVATSQSSRNVVAP 88
          + T+GCPFGE CHF H+VPGG+K V QM+N  S  A     RN   P
Sbjct: 3  YITSGCPFGEGCHFLHYVPGGFKAVYQMINVGSSPAIPPIGRNPNVP 49