Miyakogusa Predicted Gene
- Lj5g3v0868340.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0868340.1 Non Characterized Hit- tr|I1JGE1|I1JGE1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,80.31,0,SAP,DNA-binding SAP;
AP_NUCLEASE_F1_4,Exodeoxyribonuclease III xth; Putative DNA-binding
(bihelical),CUFF.54085.1
(544 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g051380.2 | apurinic endonuclease-redox protein | HC | chr... 815 0.0
Medtr1g051380.1 | apurinic endonuclease-redox protein | HC | chr... 785 0.0
Medtr3g075220.1 | DNA-(apurinic or apyrimidinic site) lyase-like... 106 5e-23
Medtr8g075810.1 | apurinic/apyrimidinic endonuclease | HC | chr8... 91 3e-18
Medtr8g075810.2 | apurinic/apyrimidinic endonuclease | HC | chr8... 91 3e-18
Medtr3g075220.2 | DNA-(apurinic or apyrimidinic site) lyase-like... 74 3e-13
>Medtr1g051380.2 | apurinic endonuclease-redox protein | HC |
chr1:20157979-20150935 | 20130731
Length = 542
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/546 (74%), Positives = 454/546 (83%), Gaps = 6/546 (1%)
Query: 1 MKQLLHLVHTSSINLISFAVVYKHLNTKTLVCP-TLKAMGSQRLFSNSSQPMLPFVEEKK 59
MK LLH V +++ NL SF KHL+ K+LVC ++KAMGS+R FSNSSQP+ FVE K
Sbjct: 1 MKLLLHFVSSTTFNLTSFQ---KHLSRKSLVCCLSVKAMGSKRPFSNSSQPISSFVEVKN 57
Query: 60 DMKLNKGLEASPGSKKHVIKGNDANSYSIEIERLRNDPSIVDTMTVQELRKTLKSIRVPA 119
DM L KGLEAS GSK H +K ND + SIEIERLRNDP+IVDTMTV ELRKTLKSIRVPA
Sbjct: 58 DMNL-KGLEASSGSKNHTVKENDVDGCSIEIERLRNDPAIVDTMTVPELRKTLKSIRVPA 116
Query: 120 KGRKEDLLSTLKSFMDNNMGEQHPQIEEEHGLLISSENTSVEVKTKKVD-EDHVDDINDN 178
KGRKEDLLS LK+FMDNN+ EQ QI +E GL ISSENTS+E+ +KV E+ V +++D
Sbjct: 117 KGRKEDLLSALKNFMDNNISEQASQIRDEQGLFISSENTSLEMNAEKVSGEEPVGEVDDT 176
Query: 179 PEVFEHSRGKRRLKQSGXXXXXXXXXXXXXXXXXXDEVSDFKPSRAKXXXXXXXXXXXXX 238
E E ++GKRRLKQS DEVSDFKPSR K
Sbjct: 177 LETVELNQGKRRLKQSEPESKIVKATTKKKLIVKSDEVSDFKPSRTKRKVSSDVVSIVAQ 236
Query: 239 XDEISTTTIPTEPWTVLAHKKPQKDWIAYNPKTMRPQPLTRDTKFVKLLSWNVNGLRALL 298
DEISTTT+ TE WTVLAHKKPQKDWIAYNP TMRP PL+R+T FVKLLSWNVNGLRALL
Sbjct: 237 SDEISTTTVQTETWTVLAHKKPQKDWIAYNPSTMRPPPLSRNTNFVKLLSWNVNGLRALL 296
Query: 299 KLEGFSALELAQREDFDVLCLQETKLQEKDINEIKRQLIDGYENSFWTCSVSKLGYSGTA 358
KL+GFSAL+LAQREDFDVLCLQETKLQEKDI EIK++LIDGYENSFWTCSVSKLGYSGTA
Sbjct: 297 KLQGFSALQLAQREDFDVLCLQETKLQEKDIEEIKQRLIDGYENSFWTCSVSKLGYSGTA 356
Query: 359 IISRIKPLSVRYGLGISDHDTEGRLVTAEFDTFYLICGYIPNSGDGLKRLSYRVTQWDPS 418
IISRIKPLS+RYGLGIS+HD+EGRLVT EFDTFYL+ GY+PNSGDGLKRLSYRVT+WDP+
Sbjct: 357 IISRIKPLSIRYGLGISEHDSEGRLVTVEFDTFYLVTGYVPNSGDGLKRLSYRVTEWDPA 416
Query: 419 LSNYLKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKKSAGFTDEERKSFAANFLSRGFVD 478
LSNYLKELEK+KPVVLTGDLNCAHEEIDIYNPAGNK+SAGFTDEERKSF NFLS GFVD
Sbjct: 417 LSNYLKELEKSKPVVLTGDLNCAHEEIDIYNPAGNKRSAGFTDEERKSFETNFLSNGFVD 476
Query: 479 TFRRQHPDVVGYTYWGYRHGGRKTNRGWRLDYFLVSESIADKVHDSYILPDVMGSDHCPV 538
TFR+QHP VVGYTYWGYRHGGRK NRGWRLDYFLVSESIADKVHDSYILPDV+GSDHCP+
Sbjct: 477 TFRKQHPGVVGYTYWGYRHGGRKYNRGWRLDYFLVSESIADKVHDSYILPDVIGSDHCPI 536
Query: 539 GLIIKL 544
GL++KL
Sbjct: 537 GLVMKL 542
>Medtr1g051380.1 | apurinic endonuclease-redox protein | HC |
chr1:20157964-20150935 | 20130731
Length = 507
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/508 (76%), Positives = 428/508 (84%), Gaps = 2/508 (0%)
Query: 38 MGSQRLFSNSSQPMLPFVEEKKDMKLNKGLEASPGSKKHVIKGNDANSYSIEIERLRNDP 97
MGS+R FSNSSQP+ FVE K DM L KGLEAS GSK H +K ND + SIEIERLRNDP
Sbjct: 1 MGSKRPFSNSSQPISSFVEVKNDMNL-KGLEASSGSKNHTVKENDVDGCSIEIERLRNDP 59
Query: 98 SIVDTMTVQELRKTLKSIRVPAKGRKEDLLSTLKSFMDNNMGEQHPQIEEEHGLLISSEN 157
+IVDTMTV ELRKTLKSIRVPAKGRKEDLLS LK+FMDNN+ EQ QI +E GL ISSEN
Sbjct: 60 AIVDTMTVPELRKTLKSIRVPAKGRKEDLLSALKNFMDNNISEQASQIRDEQGLFISSEN 119
Query: 158 TSVEVKTKKVD-EDHVDDINDNPEVFEHSRGKRRLKQSGXXXXXXXXXXXXXXXXXXDEV 216
TS+E+ +KV E+ V +++D E E ++GKRRLKQS DEV
Sbjct: 120 TSLEMNAEKVSGEEPVGEVDDTLETVELNQGKRRLKQSEPESKIVKATTKKKLIVKSDEV 179
Query: 217 SDFKPSRAKXXXXXXXXXXXXXXDEISTTTIPTEPWTVLAHKKPQKDWIAYNPKTMRPQP 276
SDFKPSR K DEISTTT+ TE WTVLAHKKPQKDWIAYNP TMRP P
Sbjct: 180 SDFKPSRTKRKVSSDVVSIVAQSDEISTTTVQTETWTVLAHKKPQKDWIAYNPSTMRPPP 239
Query: 277 LTRDTKFVKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQEKDINEIKRQL 336
L+R+T FVKLLSWNVNGLRALLKL+GFSAL+LAQREDFDVLCLQETKLQEKDI EIK++L
Sbjct: 240 LSRNTNFVKLLSWNVNGLRALLKLQGFSALQLAQREDFDVLCLQETKLQEKDIEEIKQRL 299
Query: 337 IDGYENSFWTCSVSKLGYSGTAIISRIKPLSVRYGLGISDHDTEGRLVTAEFDTFYLICG 396
IDGYENSFWTCSVSKLGYSGTAIISRIKPLS+RYGLGIS+HD+EGRLVT EFDTFYL+ G
Sbjct: 300 IDGYENSFWTCSVSKLGYSGTAIISRIKPLSIRYGLGISEHDSEGRLVTVEFDTFYLVTG 359
Query: 397 YIPNSGDGLKRLSYRVTQWDPSLSNYLKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKKS 456
Y+PNSGDGLKRLSYRVT+WDP+LSNYLKELEK+KPVVLTGDLNCAHEEIDIYNPAGNK+S
Sbjct: 360 YVPNSGDGLKRLSYRVTEWDPALSNYLKELEKSKPVVLTGDLNCAHEEIDIYNPAGNKRS 419
Query: 457 AGFTDEERKSFAANFLSRGFVDTFRRQHPDVVGYTYWGYRHGGRKTNRGWRLDYFLVSES 516
AGFTDEERKSF NFLS GFVDTFR+QHP VVGYTYWGYRHGGRK NRGWRLDYFLVSES
Sbjct: 420 AGFTDEERKSFETNFLSNGFVDTFRKQHPGVVGYTYWGYRHGGRKYNRGWRLDYFLVSES 479
Query: 517 IADKVHDSYILPDVMGSDHCPVGLIIKL 544
IADKVHDSYILPDV+GSDHCP+GL++KL
Sbjct: 480 IADKVHDSYILPDVIGSDHCPIGLVMKL 507
>Medtr3g075220.1 | DNA-(apurinic or apyrimidinic site) lyase-like
protein | HC | chr3:34235889-34229381 | 20130731
Length = 367
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 140/315 (44%), Gaps = 62/315 (19%)
Query: 284 VKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQ------------------ 325
+K ++WN N L +K D DV+ +QE ++
Sbjct: 43 LKFMTWNANSLLLRVKNNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAE 102
Query: 326 -EKDIN---EIKRQLIDGYENS-------FWTCSVSKLGYSGTAIISR--IKPLSVRYGL 372
+ D N E KR L+ N +W+ + SK Y+GTA+ + KP SV + L
Sbjct: 103 VKDDTNAAREEKRILMRALSNPPFGNYHVWWSLAESK--YAGTALFVKKCFKPKSVVFNL 160
Query: 373 G--ISDHDTEGRLVTAEFDTFYLICGYIPNSGDGLKRLSY-RVTQWDPSLSNYLKELEKT 429
S H+ +GR++ EF+T L+ Y+PN+G + S+ R +WD + ++ +
Sbjct: 161 DKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQ-NSD 219
Query: 430 KPVVLTGDLNCAHEEIDIYNP------------AGNKK---SAGFTDEERKSFAANFLSR 474
KP++ GDLN +HEEID+ P NK+ GFT ER F
Sbjct: 220 KPLIWCGDLNVSHEEIDVSQPEFFSTAKLNGYVPPNKEDYGQPGFTLAERARFGTILREG 279
Query: 475 GFVDTFRRQHPDV---VGYTYWGYRHGGRKTNRGWRLDYFLVSESIADKV-----HDSYI 526
VD +R H D G++ W GR + R+DYF+VSE I +K+ H I
Sbjct: 280 KLVDAYRFLHKDKDMEQGFS-WSGNPIGRYRGKRMRIDYFIVSEKIKEKIAACEMHGKGI 338
Query: 527 -LPDVMGSDHCPVGL 540
L GSDHCPV L
Sbjct: 339 ELQGFYGSDHCPVTL 353
>Medtr8g075810.1 | apurinic/apyrimidinic endonuclease | HC |
chr8:32057216-32050015 | 20130731
Length = 613
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 124/286 (43%), Gaps = 53/286 (18%)
Query: 284 VKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQEKDINEIKRQLIDGYENS 343
+K++S+NVNGLR + G S L D D+LC QETKL +D+ ++DGYE S
Sbjct: 1 MKIVSYNVNGLRQRITQFG-SLRNLLNSFDADILCFQETKLSRQDVT-ADLVMVDGYE-S 57
Query: 344 FWTCSVS----KLGYSGTAIISRIK----------PLSVRYGLG---------------- 373
F++C+ + + GYSG R++ PL+ G
Sbjct: 58 FFSCTRTSQKGRTGYSGVITFCRVRSAFSSNEAALPLAAEEGFTGLLCSSQTSEGKLPFF 117
Query: 374 ------------ISDHDTEGRLVTAEFDTFYLICGYIPNS-GDGLKRLSYRVTQWDPSLS 420
+ + D+EGR V + F L Y P + GD +R+ ++ T +
Sbjct: 118 MEEDLEDFSKDELLNVDSEGRCVVTDHGHFVLFNIYGPRAGGDDTERIQFKKTFYRILQK 177
Query: 421 NYLKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKKSAGFTDEERKSFAANFLSRG--FVD 478
L + + + + GDLN A +D + + + +E R+ F + + G F D
Sbjct: 178 RLESLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFE----KNEFRRWFRSMLIENGGRFSD 233
Query: 479 TFRRQHPDVV-GYTYWGYRHGGRKTNRGWRLDYFLVSESIADKVHD 523
FR +HPD + YT W G N G R+D+ L + S K D
Sbjct: 234 VFRAKHPDKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDD 279
>Medtr8g075810.2 | apurinic/apyrimidinic endonuclease | HC |
chr8:32057216-32050015 | 20130731
Length = 613
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 124/286 (43%), Gaps = 53/286 (18%)
Query: 284 VKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQEKDINEIKRQLIDGYENS 343
+K++S+NVNGLR + G S L D D+LC QETKL +D+ ++DGYE S
Sbjct: 1 MKIVSYNVNGLRQRITQFG-SLRNLLNSFDADILCFQETKLSRQDVT-ADLVMVDGYE-S 57
Query: 344 FWTCSVS----KLGYSGTAIISRIK----------PLSVRYGLG---------------- 373
F++C+ + + GYSG R++ PL+ G
Sbjct: 58 FFSCTRTSQKGRTGYSGVITFCRVRSAFSSNEAALPLAAEEGFTGLLCSSQTSEGKLPFF 117
Query: 374 ------------ISDHDTEGRLVTAEFDTFYLICGYIPNS-GDGLKRLSYRVTQWDPSLS 420
+ + D+EGR V + F L Y P + GD +R+ ++ T +
Sbjct: 118 MEEDLEDFSKDELLNVDSEGRCVVTDHGHFVLFNIYGPRAGGDDTERIQFKKTFYRILQK 177
Query: 421 NYLKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKKSAGFTDEERKSFAANFLSRG--FVD 478
L + + + + GDLN A +D + + + +E R+ F + + G F D
Sbjct: 178 RLESLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFE----KNEFRRWFRSMLIENGGRFSD 233
Query: 479 TFRRQHPDVV-GYTYWGYRHGGRKTNRGWRLDYFLVSESIADKVHD 523
FR +HPD + YT W G N G R+D+ L + S K D
Sbjct: 234 VFRAKHPDKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDD 279
>Medtr3g075220.2 | DNA-(apurinic or apyrimidinic site) lyase-like
protein | HC | chr3:34235814-34232250 | 20130731
Length = 278
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 37/201 (18%)
Query: 284 VKLLSWNVNGLRALLKLEGFSALELAQREDFDVLCLQETKLQ------------------ 325
+K ++WN N L +K D DV+ +QE ++
Sbjct: 43 LKFMTWNANSLLLRVKNNWSEFSNFITTFDPDVIAIQEVRMPAASSSSSNSKSAPKNQAE 102
Query: 326 -EKDIN---EIKRQLIDGYENS-------FWTCSVSKLGYSGTAIISR--IKPLSVRYGL 372
+ D N E KR L+ N +W+ + SK Y+GTA+ + KP SV + L
Sbjct: 103 VKDDTNAAREEKRILMRALSNPPFGNYHVWWSLAESK--YAGTALFVKKCFKPKSVVFNL 160
Query: 373 G--ISDHDTEGRLVTAEFDTFYLICGYIPNSGDGLKRLSY-RVTQWDPSLSNYLKELEKT 429
S H+ +GR++ EF+T L+ Y+PN+G + S+ R +WD + ++ +
Sbjct: 161 DKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKRILEFVNQ-NSD 219
Query: 430 KPVVLTGDLNCAHEEIDIYNP 450
KP++ GDLN +HEEID+ P
Sbjct: 220 KPLIWCGDLNVSHEEIDVSQP 240