Miyakogusa Predicted Gene

Lj5g3v0866920.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0866920.1 Non Characterized Hit- tr|B4FT43|B4FT43_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,63.89,9e-19,HOMEOBOX_2,Homeodomain; Homeobox,Homeodomain;
coiled-coil,NULL; no description,Homeodomain-like;
Hom,NODE_59246_length_311_cov_30.212219.path2.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g061040.1 | sequence-specific DNA-binding transcription fa...   144   2e-35

>Medtr8g061040.1 | sequence-specific DNA-binding transcription
          factor | HC | chr8:21158982-21150809 | 20130731
          Length = 375

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/72 (91%), Positives = 67/72 (93%)

Query: 1  MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQM 60
          MGRPPSNGGPAFRFTQ EV EMEAIL EHNNAMPARDVL  LA+KFSESPDRKGKITVQM
Sbjct: 1  MGRPPSNGGPAFRFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQM 60

Query: 61 KQVWNWFQNKRY 72
          KQVWNWFQNKRY
Sbjct: 61 KQVWNWFQNKRY 72