Miyakogusa Predicted Gene

Lj5g3v0841140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0841140.1 Non Characterized Hit- tr|D8RXI2|D8RXI2_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.37,3e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.54051.1
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g056390.1 | CSL zinc finger protein | HC | chr1:24673253-2...   262   1e-70
Medtr4g068290.1 | CSL zinc finger protein, putative | HC | chr4:...   182   2e-46

>Medtr1g056390.1 | CSL zinc finger protein | HC |
           chr1:24673253-24675724 | 20130731
          Length = 240

 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/153 (84%), Positives = 144/153 (94%)

Query: 24  AGDTNRAFSPCSDARVQRSDGFTFGIAFASKDKFFYSNNSTLQLSPCDARLSLSNANSQV 83
           AGDTN+ FSPC+D RVQRSDGFT G AFASKDKFFY+NN+++QLSPCD+RLSLSN+NSQ+
Sbjct: 21  AGDTNKVFSPCTDTRVQRSDGFTLGFAFASKDKFFYNNNNSIQLSPCDSRLSLSNSNSQI 80

Query: 84  SVFRPKVDEISILTVNSSSFVADLYGYMVAFAGRKYAARSPPAFVANSTYTVTSFTLVLE 143
           S+FRPKVDEIS+LTVNSSSFVAD YGYMVAFAGRKYAARSPPAF+AN +YTVTSFTLVLE
Sbjct: 81  SLFRPKVDEISLLTVNSSSFVADSYGYMVAFAGRKYAARSPPAFIANGSYTVTSFTLVLE 140

Query: 144 FKKGRLQNLYWKRDGCSKCSSNSKAVCLNNQDC 176
           FKKGRLQNL+WKRDGCSKC  NSKAVCLN QDC
Sbjct: 141 FKKGRLQNLFWKRDGCSKCPKNSKAVCLNGQDC 173


>Medtr4g068290.1 | CSL zinc finger protein, putative | HC |
           chr4:25606828-25604877 | 20130731
          Length = 243

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 115/154 (74%), Gaps = 7/154 (4%)

Query: 23  EAGDTNRAFSPCSDARVQRSDGFTFGIAFASKDKFFYSNNSTLQLSPCDARLSLSNANSQ 82
           +A DTN  + PC DA+VQ+ DGFTFGIAFA K  F  + +S  QLSPCD+RLSL+   +Q
Sbjct: 35  DAVDTNDVYLPCEDAKVQKGDGFTFGIAFADKQSF--TPDSGPQLSPCDSRLSLA-GKAQ 91

Query: 83  VSVFRPKVDEISILTVNSSSFVADLYGYMVAFAGRKYAARSPPAFVANSTYTVTSFTLVL 142
           + VFRP VDEIS+LTVN SS  +D   YMVAFAG+KYAARS P  +A+ ++T+TSFTLVL
Sbjct: 92  LVVFRPMVDEISLLTVNRSS--SDSGTYMVAFAGQKYAARSLPIMLADDSHTITSFTLVL 149

Query: 143 EFKKGRLQNLYWKRDGCSKCSSNSKAVCLNNQDC 176
           EF+ G LQNL+WK  GC  C S S  +CLNNQDC
Sbjct: 150 EFQDGTLQNLFWKSFGCDACPSGS--ICLNNQDC 181