Miyakogusa Predicted Gene

Lj5g3v0780820.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0780820.2 tr|Q065N0|Q065N0_9SYNE ATPase OS=Synechococcus
sp. BL107 GN=BL107_14855 PE=3 SV=1,28.51,1e-18,no description,NULL;
seg,NULL; ABC_membrane,ABC transporter, transmembrane domain; ABC
transporter t,CUFF.53952.2
         (422 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g059830.1 | ABC transporter of the protein | HC | chr1:260...   507   e-143
Medtr1g059830.2 | ABC transporter of the protein | HC | chr1:260...   505   e-143

>Medtr1g059830.1 | ABC transporter of the protein | HC |
           chr1:26042054-26036249 | 20130731
          Length = 618

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/328 (76%), Positives = 281/328 (85%), Gaps = 4/328 (1%)

Query: 99  SLRIQSST--KTQQTLQFLKPYLASQHKPILYGWLCSAISVYSLSNLLSRFSXXXXXXXX 156
           +L+I+S++      T+QFLKPYL SQ KPILYGWLCSAISVYSLSNLLS+FS        
Sbjct: 37  NLKIRSTSLRTNNNTIQFLKPYLTSQQKPILYGWLCSAISVYSLSNLLSKFSAVTTATTT 96

Query: 157 XXXXX--XLGGFVLARLVATYAQHALLWEASLHAVYNVRVDVFDRVLQRELAYFEANDAV 214
                   LGG VL RL+ATYAQHALLWEASL+AVY VRV VFDRV+QREL +FEANDA+
Sbjct: 97  VDVRQGLALGGLVLVRLIATYAQHALLWEASLNAVYEVRVHVFDRVMQRELTFFEANDAI 156

Query: 215 SAGDIAYRVTAEASDLATTLYTLLNTIVPSTLQLSAMVMQMLAISPVLSLISATVIPCMG 274
           S+GDIAYR+TAEASDLA TLY LLNTIVPS+LQ SAM+M MLAISP LSLISA VIPCM 
Sbjct: 157 SSGDIAYRITAEASDLAATLYALLNTIVPSSLQFSAMIMHMLAISPELSLISAMVIPCMV 216

Query: 275 LVVVFLGQELRKISKESHLSVAAISSYLNEMLPAILFVKANNAELCESARFKRLALTDYS 334
           LVV FLGQELRKISK+SH+S+AA+S+YLNEMLPA LFVKANNAE  ES RFKRLAL D+S
Sbjct: 217 LVVTFLGQELRKISKKSHISIAALSAYLNEMLPAYLFVKANNAESLESVRFKRLALMDFS 276

Query: 335 AKLNKKRMKAIIPQVIQAIYLGVLSILCAGSLVISRGSFDRRSLISFVTSLLFLIEPIQD 394
           A LNKKRMKA+IPQVIQAIY GVLSILCAGS+VISRGSFDR SL+SFVTSLLFLIEPIQD
Sbjct: 277 AMLNKKRMKAVIPQVIQAIYFGVLSILCAGSIVISRGSFDRCSLVSFVTSLLFLIEPIQD 336

Query: 395 VGKAYNEWRQGEPAVERLVALTTFKNEL 422
           VGKAYNEWR+GEPA+ERL A+T FKN++
Sbjct: 337 VGKAYNEWREGEPAIERLFAMTRFKNKV 364


>Medtr1g059830.2 | ABC transporter of the protein | HC |
           chr1:26042054-26036249 | 20130731
          Length = 475

 Score =  505 bits (1301), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/328 (76%), Positives = 281/328 (85%), Gaps = 4/328 (1%)

Query: 99  SLRIQSST--KTQQTLQFLKPYLASQHKPILYGWLCSAISVYSLSNLLSRFSXXXXXXXX 156
           +L+I+S++      T+QFLKPYL SQ KPILYGWLCSAISVYSLSNLLS+FS        
Sbjct: 37  NLKIRSTSLRTNNNTIQFLKPYLTSQQKPILYGWLCSAISVYSLSNLLSKFSAVTTATTT 96

Query: 157 XXXXX--XLGGFVLARLVATYAQHALLWEASLHAVYNVRVDVFDRVLQRELAYFEANDAV 214
                   LGG VL RL+ATYAQHALLWEASL+AVY VRV VFDRV+QREL +FEANDA+
Sbjct: 97  VDVRQGLALGGLVLVRLIATYAQHALLWEASLNAVYEVRVHVFDRVMQRELTFFEANDAI 156

Query: 215 SAGDIAYRVTAEASDLATTLYTLLNTIVPSTLQLSAMVMQMLAISPVLSLISATVIPCMG 274
           S+GDIAYR+TAEASDLA TLY LLNTIVPS+LQ SAM+M MLAISP LSLISA VIPCM 
Sbjct: 157 SSGDIAYRITAEASDLAATLYALLNTIVPSSLQFSAMIMHMLAISPELSLISAMVIPCMV 216

Query: 275 LVVVFLGQELRKISKESHLSVAAISSYLNEMLPAILFVKANNAELCESARFKRLALTDYS 334
           LVV FLGQELRKISK+SH+S+AA+S+YLNEMLPA LFVKANNAE  ES RFKRLAL D+S
Sbjct: 217 LVVTFLGQELRKISKKSHISIAALSAYLNEMLPAYLFVKANNAESLESVRFKRLALMDFS 276

Query: 335 AKLNKKRMKAIIPQVIQAIYLGVLSILCAGSLVISRGSFDRRSLISFVTSLLFLIEPIQD 394
           A LNKKRMKA+IPQVIQAIY GVLSILCAGS+VISRGSFDR SL+SFVTSLLFLIEPIQD
Sbjct: 277 AMLNKKRMKAVIPQVIQAIYFGVLSILCAGSIVISRGSFDRCSLVSFVTSLLFLIEPIQD 336

Query: 395 VGKAYNEWRQGEPAVERLVALTTFKNEL 422
           VGKAYNEWR+GEPA+ERL A+T FKN++
Sbjct: 337 VGKAYNEWREGEPAIERLFAMTRFKNKV 364