Miyakogusa Predicted Gene

Lj5g3v0746870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0746870.1 Non Characterized Hit- tr|O22175|O22175_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,37.25,0.0000000002,INTEGRASE,Integrase, catalytic core; seg,NULL; no
description,NULL; rve,Integrase, catalytic core; g,CUFF.53967.1
         (498 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060140.1 | hypothetical protein | HC | chr1:26180509-2618...    63   5e-10
Medtr8g068060.1 | hypothetical protein | LC | chr8:28352653-2834...    59   1e-08
Medtr6g015705.1 | hypothetical protein | LC | chr6:5375998-53743...    52   1e-06

>Medtr1g060140.1 | hypothetical protein | HC |
           chr1:26180509-26181129 | 20130731
          Length = 206

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 403 RRSSRQVRAPSYLQDYVCQTQ------YPLHHYLTYDKLSPTYRNYVLTVAEIYEPQFFH 456
           R S    + P +LQDY+C +       + ++ YL+   LS ++++Y L++  I E   + 
Sbjct: 62  RHSHGTHKPPPHLQDYICNSSSTSNCTHSINEYLSCLNLSSSHKDYALSLDAIPESSNYF 121

Query: 457 QAVKYPEWRQAMKEEIDSLEANNTWSIVSLPADKKVIGCKWV 498
           +A K+P W +A  +E+ +LE N   SI+        IGCKWV
Sbjct: 122 EARKHPCWVEAKNKELKALETNCNLSILDKLVGVNCIGCKWV 163


>Medtr8g068060.1 | hypothetical protein | LC |
           chr8:28352653-28346900 | 20130731
          Length = 249

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 215 RKHEHLLNVARSLMFQSRVPLHFWGECVATATFLINRTPTHVLNYVTPYEKLYGKAPDFT 274
           RKH+H+LNV R+++FQS++P   W   V  A  LI R  T   ++ +PY  LY   P+  
Sbjct: 66  RKHQHILNVDRAILFQSKLPKKNWSYVVLHAVCLIKRVTTP--HHKSPYHVLYDHVPNIQ 123

Query: 275 NLKVFGC 281
           + KVFGC
Sbjct: 124 SFKVFGC 130


>Medtr6g015705.1 | hypothetical protein | LC | chr6:5375998-5374353
           | 20130731
          Length = 234

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 23/175 (13%)

Query: 277 KVFGCLCFVSTQPAQRNKFTARSVPGVFMGYPVGYKGYRVYNLQTKQFLVSRDIVFHEDQ 336
           +VFG L + ST  A R+K  +R+   +F GY  G KG  + ++++KQ  V  ++  HE  
Sbjct: 59  QVFGSLAYASTLQAHRSKLASRARKCIFHGYKSGMKGVVLLDIRSKQISVYINVTHHECI 118

Query: 337 FPFHS-------VHHTAAQPNLFNDLVIHL-PLP-EHNMAPTVPISAPETSNSPSLGYLG 387
            P+ S        +HT       +D V ++ PLP   +++   P+      N+P      
Sbjct: 119 LPYQSNSLNISWNYHTNISQESIHDSVYNISPLPTTESVSDISPLPTDSLHNTP-----I 173

Query: 388 EASTSQVPSPTQVPTRRSSRQVRAPSYLQD------YVCQTQYPLHHYLTYDKLS 436
           + STS    PT     +S+R    P+YL+       Y   T   L  +L Y  +S
Sbjct: 174 DISTSFATLPT---FHKSTRIRSTPAYLKRLCMQFIYSVTTSCQLRCFLPYSTIS 225