Miyakogusa Predicted Gene

Lj5g3v0706670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0706670.1 tr|A9SW65|A9SW65_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_136271,46.99,0.000000000000003,Nucleopor_Nup85,
Nucleoporin Nup85-like; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL,CUFF.53819.1
         (97 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g006690.1 | Nup85 nucleoporin protein | HC | chr1:110219-9...   169   4e-43
Medtr1g006690.2 | Nup85 nucleoporin protein | HC | chr1:108027-9...   169   7e-43

>Medtr1g006690.1 | Nup85 nucleoporin protein | HC |
           chr1:110219-98846 | 20130731
          Length = 710

 Score =  169 bits (429), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 85/93 (91%)

Query: 1   MKQGMSLLENLLYRQSVQHNDTLLKNIEICRLYELDHISSKIMKVAGVFHWKHGPKGAGV 60
           MKQGM LLENLLYRQSVQHN+ LLKNIEICRLYELDHISS IMKVAGV+HWKHG KGAGV
Sbjct: 482 MKQGMGLLENLLYRQSVQHNNMLLKNIEICRLYELDHISSNIMKVAGVYHWKHGRKGAGV 541

Query: 61  FWLQQAQDASCLGRIALQLFDAVGKLISDESFK 93
           FWLQQ+QD +CL RIA QLFD+VGK ISDESFK
Sbjct: 542 FWLQQSQDTNCLDRIAQQLFDSVGKSISDESFK 574


>Medtr1g006690.2 | Nup85 nucleoporin protein | HC |
           chr1:108027-98846 | 20130731
          Length = 526

 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 85/93 (91%)

Query: 1   MKQGMSLLENLLYRQSVQHNDTLLKNIEICRLYELDHISSKIMKVAGVFHWKHGPKGAGV 60
           MKQGM LLENLLYRQSVQHN+ LLKNIEICRLYELDHISS IMKVAGV+HWKHG KGAGV
Sbjct: 298 MKQGMGLLENLLYRQSVQHNNMLLKNIEICRLYELDHISSNIMKVAGVYHWKHGRKGAGV 357

Query: 61  FWLQQAQDASCLGRIALQLFDAVGKLISDESFK 93
           FWLQQ+QD +CL RIA QLFD+VGK ISDESFK
Sbjct: 358 FWLQQSQDTNCLDRIAQQLFDSVGKSISDESFK 390