Miyakogusa Predicted Gene

Lj5g3v0659910.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0659910.2 Non Characterized Hit- tr|K4ALX4|K4ALX4_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica ,46.62,1e-18,RNA
recognition motif,RNA recognition motif domain; seg,NULL; no
description,Nucleotide-binding, alp,CUFF.53765.2
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   160   4e-40
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   160   4e-40
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-...    75   3e-14
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-...    75   3e-14
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-...    74   7e-14
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    72   3e-13
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    72   3e-13
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-...    70   5e-13
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    70   9e-13
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    58   3e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-...    51   3e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-...    51   3e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-...    51   4e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-...    50   6e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   1e-06
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    48   3e-06
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    48   3e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    47   6e-06

>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:28254735-28256581 | 20130731
          Length = 280

 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 109/152 (71%), Gaps = 6/152 (3%)

Query: 3   TTSATSLALPILQTRQPLGSSQRFSS--SFCLNPNFKSISISAVFLPSTLSLSSSRFVTR 60
           +TSATSL LP L T+    S Q FSS  S  LNPNFK  S S+V L  +LS+S  RF++R
Sbjct: 2   STSATSLVLPSLFTKN---SPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISH-RFISR 57

Query: 61  VAVSSEFDQEEDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIY 120
           VAVSSEFDQEEDTF D  +T S++P+ ++FVGNLPFSVDSAQLAE+F++AG+VE+VEVIY
Sbjct: 58  VAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIY 117

Query: 121 DKMTGNSRGFAFVTMXXXXXXXXXXXXFNNYV 152
           DK TG SRGF FVTM             N YV
Sbjct: 118 DKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYV 149



 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 86  DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
           D++V VGNL + VD+  L  LF + G V   +VIYD+ +G SRGF FVT
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVT 243


>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:28254735-28256581 | 20130731
          Length = 280

 Score =  160 bits (405), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/152 (59%), Positives = 109/152 (71%), Gaps = 6/152 (3%)

Query: 3   TTSATSLALPILQTRQPLGSSQRFSS--SFCLNPNFKSISISAVFLPSTLSLSSSRFVTR 60
           +TSATSL LP L T+    S Q FSS  S  LNPNFK  S S+V L  +LS+S  RF++R
Sbjct: 2   STSATSLVLPSLFTKN---SPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISH-RFISR 57

Query: 61  VAVSSEFDQEEDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIY 120
           VAVSSEFDQEEDTF D  +T S++P+ ++FVGNLPFSVDSAQLAE+F++AG+VE+VEVIY
Sbjct: 58  VAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIY 117

Query: 121 DKMTGNSRGFAFVTMXXXXXXXXXXXXFNNYV 152
           DK TG SRGF FVTM             N YV
Sbjct: 118 DKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYV 149



 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 86  DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
           D++V VGNL + VD+  L  LF + G V   +VIYD+ +G SRGF FVT
Sbjct: 195 DNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVT 243


>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
           chr3:34381440-34379306 | 20130731
          Length = 271

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 70  EEDTFSDDAETRSFAP---DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGN 126
           E +T +DD+    F     D K+FVGN PF VDS +LA LF  AG VE+ EVIY++ T  
Sbjct: 89  ETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDL 148

Query: 127 SRGFAFVTMXXXXXXXXXXXXFNNY 151
           SRGF FVTM            FN Y
Sbjct: 149 SRGFGFVTMSTVEEAESAVEKFNGY 173



 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 81  RSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           R+F P  +++V NL + VD+++L ++F + G +    V+YD+ TG SRGF FVTM
Sbjct: 200 RTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTM 254


>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
           chr3:34381451-34378914 | 20130731
          Length = 291

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 70  EEDTFSDDAETRSFAP---DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGN 126
           E +T +DD+    F     D K+FVGN PF VDS +LA LF  AG VE+ EVIY++ T  
Sbjct: 89  ETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDL 148

Query: 127 SRGFAFVTMXXXXXXXXXXXXFNNY 151
           SRGF FVTM            FN Y
Sbjct: 149 SRGFGFVTMSTVEEAESAVEKFNGY 173



 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 81  RSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           R+F P  +++V NL + VD+++L ++F + G +    V+YD+ TG SRGF FVTM
Sbjct: 200 RTFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTM 254


>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
           chr4:43224367-43221650 | 20130731
          Length = 300

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 86  DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           D K+FVGNLPF VDS +LA+LF+ +G VE+ EVIY++ T  SRGF FVTM
Sbjct: 121 DLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTM 170



 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 39/55 (70%)

Query: 81  RSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           R+F    + +VGNLP+ VD++ L +LF + G VE  +V+YD+ TG SRGF FVTM
Sbjct: 210 RTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTM 264


>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700218-24705084 | 20130731
          Length = 311

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 41/48 (85%)

Query: 88  KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           ++FVGNLPFS+ S+QLA+LF +AGNV  VE++YD +T  SRGFAFVTM
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTM 156


>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700221-24703822 | 20130731
          Length = 311

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 41/48 (85%)

Query: 88  KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           ++FVGNLPFS+ S+QLA+LF +AGNV  VE++YD +T  SRGFAFVTM
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTM 156


>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
           chr7:43324307-43322087 | 20130731
          Length = 318

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 9/69 (13%)

Query: 68  DQEED-TFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGN 126
           D+E+  T SDDA         +++VGNLPFS+ S+QLA++F +AG V  VE++YD++T  
Sbjct: 97  DEEQKVTTSDDA--------GRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDR 148

Query: 127 SRGFAFVTM 135
           SRGFAFVTM
Sbjct: 149 SRGFAFVTM 157


>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr1:17072567-17075712 | 20130731
          Length = 285

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 40/48 (83%)

Query: 88  KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
           K++ GNLP+SVDSA LA L ++ G+ E++EV+YD+ TG SRGFAFVTM
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTM 161



 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 86  DHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
           ++K+FVGNL ++V S  L + FQ+ G V    V++D  TG SRG+ FV+
Sbjct: 203 EYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVS 251


>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr3:8413608-8404220 | 20130731
          Length = 235

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 47  PSTLSLSSSRFVTRVAVSSEFDQEEDTFSDDAETRSFAPDHKVFVGNLPFSVDSAQLAEL 106
           PS+L +++ RF     VSSE         D    R      K++VGN+P +V + +L ++
Sbjct: 31  PSSLVVTTRRFRKHFVVSSE-----QATVDSPALR------KLYVGNIPRTVSNDELEKI 79

Query: 107 FQDAGNVEVVEVIYDKMTGNSRGFAFVTM 135
            Q+ G VE  EV+YDK +  SR FAFVTM
Sbjct: 80  VQEHGAVEKAEVMYDKYSKRSRRFAFVTM 108


>Medtr3g095230.2 | CC1-like splicing factor | LC |
           chr3:43513031-43520987 | 20130731
          Length = 576

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 84  APDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
           A D K++VGNL F++  +QL E+F+  G VEVV++  D  TG+ +GF F+
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFI 363


>Medtr3g095230.3 | CC1-like splicing factor | LC |
           chr3:43513031-43520279 | 20130731
          Length = 576

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 84  APDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
           A D K++VGNL F++  +QL E+F+  G VEVV++  D  TG+ +GF F+
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFI 363


>Medtr3g095230.1 | CC1-like splicing factor | LC |
           chr3:43513030-43521003 | 20130731
          Length = 587

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 84  APDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
           A D K++VGNL F++  +QL E+F+  G VEVV++  D  TG+ +GF F+
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFI 363


>Medtr8g092550.1 | CC1-like splicing factor | HC |
           chr8:38688579-38694751 | 20130731
          Length = 567

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 84  APDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
           A D K++VGNL F++  A L E+F+  G +EVV++  D  TG+ +GF FV
Sbjct: 300 AVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFV 349


>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr3:36253866-36255120 | 20130731
          Length = 135

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 88  KVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
           K+FVG L +SVD   L + F   G+V  V ++YDK +G +RGF FV
Sbjct: 37  KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFV 82


>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:48659959-48661573 | 20130731
          Length = 139

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 32  LNPNFKSISISAVFLPSTLSLSSSRFVTRVAVSSEFDQEEDTFSDDAETRSFAPDHKVFV 91
           L+ N K  S+S +  P TLSLS S   TR A S  F       S +    S     K+F+
Sbjct: 20  LSGNLKKQSVSEISFP-TLSLSISTTSTRYAPSPSFCSTSSESSVECNMPS---STKIFI 75

Query: 92  GNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
             LP S     L ++F   G V  V+++ DK TG S GFA++
Sbjct: 76  KGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYI 117


>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:48659959-48661848 | 20130731
          Length = 162

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 32  LNPNFKSISISAVFLPSTLSLSSSRFVTRVAVSSEFDQEEDTFSDDAETRSFAPDHKVFV 91
           L+ N K  S+S +  P TLSLS S   TR A S  F       S +    S     K+F+
Sbjct: 20  LSGNLKKQSVSEISFP-TLSLSISTTSTRYAPSPSFCSTSSESSVECNMPS---STKIFI 75

Query: 92  GNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFV 133
             LP S     L ++F   G V  V+++ DK TG S GFA++
Sbjct: 76  KGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYI 117


>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:45527069-45523373 | 20130731
          Length = 268

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 84  APDHKVFVGNLPFSVDSAQLAELFQDAGNVEVVEVIYDKMTGNSRGFAFVT 134
           AP  K+F+G + +S D   L E F   G V    +I D+ TG SRGF F+T
Sbjct: 39  APTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFIT 89