Miyakogusa Predicted Gene

Lj5g3v0659640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0659640.1 Non Characterized Hit- tr|B9RDU6|B9RDU6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,48.45,9e-18,ARID/BRIGHT DNA binding domain,NULL; BRIGHT, ARID
(A/T-rich interaction domain) d,ARID/BRIGHT DNA-bi,CUFF.53655.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g078120.1 | AT-rich interactive domain protein | HC | chr7...    75   3e-14
Medtr7g078120.3 | AT-rich interactive domain protein | HC | chr7...    75   4e-14
Medtr7g078120.2 | AT-rich interactive domain protein | HC | chr7...    75   4e-14
Medtr8g028905.1 | ARID/bright DNA-binding domain protein | LC | ...    69   2e-12
Medtr8g098655.1 | ARID/bright DNA-binding domain protein | HC | ...    56   1e-08
Medtr8g098605.1 | ARID/bright DNA-binding domain protein | HC | ...    55   3e-08
Medtr1g073380.1 | ARID/bright DNA-binding domain protein | LC | ...    55   4e-08
Medtr1g073590.1 | ARID/bright DNA-binding domain protein | HC | ...    55   5e-08
Medtr1g073530.1 | ARID/bright DNA-binding domain protein | LC | ...    54   1e-07

>Medtr7g078120.1 | AT-rich interactive domain protein | HC |
           chr7:29536336-29530632 | 20130731
          Length = 661

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%)

Query: 59  KKVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWME 118
           + +DL KLF+VVK KGGYD VC  +LW+L GEE G G  VGS+VKL Y KYLS L+  ++
Sbjct: 6   QTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKLVYSKYLSGLETPLK 65

Query: 119 KNVD 122
             VD
Sbjct: 66  NVVD 69


>Medtr7g078120.3 | AT-rich interactive domain protein | HC |
           chr7:29536958-29531553 | 20130731
          Length = 600

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%)

Query: 59  KKVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWME 118
           + +DL KLF+VVK KGGYD VC  +LW+L GEE G G  VGS+VKL Y KYLS L+  ++
Sbjct: 6   QTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKLVYSKYLSGLETPLK 65

Query: 119 KNVD 122
             VD
Sbjct: 66  NVVD 69


>Medtr7g078120.2 | AT-rich interactive domain protein | HC |
           chr7:29536940-29531591 | 20130731
          Length = 600

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%)

Query: 59  KKVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWME 118
           + +DL KLF+VVK KGGYD VC  +LW+L GEE G G  VGS+VKL Y KYLS L+  ++
Sbjct: 6   QTLDLYKLFMVVKDKGGYDVVCKNELWDLVGEEYGLGVKVGSSVKLVYSKYLSGLETPLK 65

Query: 119 KNVD 122
             VD
Sbjct: 66  NVVD 69


>Medtr8g028905.1 | ARID/bright DNA-binding domain protein | LC |
           chr8:11239626-11242696 | 20130731
          Length = 593

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 9/106 (8%)

Query: 60  KVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEK 119
           KVDL K    V GKGG+DAVC+ +LW+L GEE G G +VGST+KL + KY S  ++ + K
Sbjct: 15  KVDLYKFLTAVDGKGGFDAVCDGELWDLVGEECGLGVNVGSTLKLVFSKYKSVFESCVMK 74

Query: 120 NVDRKEVINLECKMDTYGVFLMDCTAQAEKLIFDRAPNEVAGEELK 165
             D K V +        G  LM   A   + +  +  N VAGE++K
Sbjct: 75  VGDAK-VFD--------GSGLMGFEADVNEFLSGQGGNVVAGEKVK 111


>Medtr8g098655.1 | ARID/bright DNA-binding domain protein | HC |
           chr8:41176503-41175564 | 20130731
          Length = 310

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL +LF +VK KGGYDAV  + LW+    E G    V ++VKL Y KYLS  + W+ K 
Sbjct: 67  LDLYQLFFLVKEKGGYDAVSRKGLWDSVIIEMGFNLHVLASVKLVYEKYLSDFEGWLSKT 126

Query: 121 VDRKEVIN 128
            + + + N
Sbjct: 127 FEERSLKN 134


>Medtr8g098605.1 | ARID/bright DNA-binding domain protein | HC |
           chr8:41150066-41146987 | 20130731
          Length = 596

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL +LF +VK KGGYDA+  + LW+   +E G    + ++VKL Y KYLS  + W+ K 
Sbjct: 74  LDLYQLFSLVKEKGGYDAISRKGLWDSVIDELGLDLRILASVKLVYEKYLSDFEGWLRKT 133

Query: 121 VDRKEVINLECKMDTYG 137
            + K      CK  ++G
Sbjct: 134 FEEK-----SCKDGSHG 145


>Medtr1g073380.1 | ARID/bright DNA-binding domain protein | LC |
           chr1:32584996-32581999 | 20130731
          Length = 592

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL +LF +VK KGGYDAV  + LWN    E G    V ++VKL + KYL+  + W+ K+
Sbjct: 76  LDLYQLFALVKEKGGYDAVSRKGLWNSVIVELGLDLRVLASVKLVFDKYLNDFEGWLRKS 135

Query: 121 VDRKEVIN 128
            + K + N
Sbjct: 136 FEEKSLKN 143


>Medtr1g073590.1 | ARID/bright DNA-binding domain protein | HC |
           chr1:32660492-32656893 | 20130731
          Length = 579

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL +LF +VK KGGYDAV  + LWN    E G    + ++VKL + KYL+  + W+ K+
Sbjct: 76  LDLYQLFALVKEKGGYDAVSRKGLWNSVIVELGLDLRILASVKLVFDKYLNDFEGWLRKS 135

Query: 121 VDRKEVIN 128
            + K + N
Sbjct: 136 FEEKSLKN 143


>Medtr1g073530.1 | ARID/bright DNA-binding domain protein | LC |
           chr1:32633994-32631245 | 20130731
          Length = 582

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 41/68 (60%)

Query: 61  VDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKN 120
           +DL +LF +VK KGGYDAV  + LW     E G    V  +VKLF+ KYL+  + W+ K+
Sbjct: 76  LDLYQLFSLVKEKGGYDAVSRKGLWKSVIVELGLDLRVLPSVKLFFDKYLNDFEGWLRKS 135

Query: 121 VDRKEVIN 128
           ++   + N
Sbjct: 136 LEENSLKN 143