Miyakogusa Predicted Gene

Lj5g3v0659340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0659340.1 Non Characterized Hit- tr|I1LZ84|I1LZ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37816 PE,72.2,0,Sigma2
domain of RNA polymerase sigma factors,RNA polymerase sigma factor,
region 2; Sigma3 and sigm,CUFF.53640.1
         (569 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g063850.1 | RNA polymerase sigma factor | HC | chr1:280302...   768   0.0  
Medtr7g101840.1 | RNA polymerase sigma factor | HC | chr7:410664...   556   e-158
Medtr3g118290.1 | RNA polymerase sigma factor | HC | chr3:553778...   242   9e-64
Medtr1g007370.1 | RNA polymerase sigma factor | HC | chr1:310765...   165   9e-41
Medtr3g033420.1 | RNA polymerase sigma factor | HC | chr3:106852...   163   5e-40
Medtr0172s0030.1 | RNA polymerase sigma factor | HC | scaffold01...   131   1e-30
Medtr0172s0030.2 | RNA polymerase sigma factor | HC | scaffold01...   131   1e-30
Medtr3g090900.1 | RNA polymerase sigma factor | HC | chr3:412740...   116   6e-26
Medtr1g007370.2 | RNA polymerase sigma factor | HC | chr1:310765...    93   5e-19
Medtr3g090900.2 | RNA polymerase sigma factor | HC | chr3:412740...    87   6e-17
Medtr3g090900.3 | RNA polymerase sigma factor | HC | chr3:412740...    80   4e-15
Medtr3g033150.1 | RNA polymerase sigma factor | HC | chr3:105390...    72   2e-12

>Medtr1g063850.1 | RNA polymerase sigma factor | HC |
           chr1:28030240-28023352 | 20130731
          Length = 561

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/570 (66%), Positives = 451/570 (79%), Gaps = 10/570 (1%)

Query: 1   MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVL 60
           MESART+FC+SP  PPRTHHWNTLPSSSYTSVLM REQ APTV++  TS S+Q FPTSVL
Sbjct: 1   MESARTMFCSSPLCPPRTHHWNTLPSSSYTSVLMLREQVAPTVTAWCTSYSSQNFPTSVL 60

Query: 61  LQEQRDEQRPLLHVSKEDKTCQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWPH 120
           LQEQ DE RPLLH+SK+DKTCQA LN RQ+DM  V E+N+    DQV  DFRQHLHL P 
Sbjct: 61  LQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVSVQEKNDTSNTDQVARDFRQHLHLLPR 120

Query: 121 LQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXXXX 180
           L+NLLTSS+TGE+D SSTLQH       A+ + CNA+SLS+QA S ++   S+       
Sbjct: 121 LENLLTSSQTGEMDGSSTLQH-------ADSLQCNAVSLSKQAASVAEDLISIKADEDAD 173

Query: 181 XXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQE 240
                           P    NKTVRSTRL E              D +TYL  KD  +E
Sbjct: 174 NSIPFGLASSSSAE--PLLGGNKTVRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEE 231

Query: 241 RIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQF 299
           +++V++KI++  +Q+DP   FL+SP  K+LL  E+ESQL+VQIQ+LL+LE+LKTSLQSQF
Sbjct: 232 KLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQF 291

Query: 300 GREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLL 359
           GREPTMAEWAEGAGL CR ++ +LRCGNRSREKLI+ANLR+V ++AK+YQGRGLS++DLL
Sbjct: 292 GREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLL 351

Query: 360 QEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILE 419
           QEGS GL+KS+KKFK Q GCRF SYAYWWIKQAIRKAI++HSRTIRLPEKVY +L K+LE
Sbjct: 352 QEGSTGLIKSIKKFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRLPEKVYNKLSKVLE 411

Query: 420 AKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITAD 479
           AKKLY +EGNL PTKE+LARRVGIS DK+  LL+VARIP+SMQ TV ++ +TTFQEITAD
Sbjct: 412 AKKLYKEEGNLNPTKEELARRVGISPDKVDRLLFVARIPISMQNTVGSETDTTFQEITAD 471

Query: 480 TSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKE 539
            +IESP+ SV+K+LMRRHVLN+L+ LRPKERRIIRLRFGFEDGE+KSLSE+GEIFGLS+E
Sbjct: 472 CAIESPNMSVAKQLMRRHVLNVLNILRPKERRIIRLRFGFEDGEEKSLSEIGEIFGLSRE 531

Query: 540 RVRQLENRAFYKLKKCLASQGLDAYADLLV 569
           RVRQLE+RA YKLKK L  QGLDAYADLL+
Sbjct: 532 RVRQLESRALYKLKKYLVGQGLDAYADLLI 561


>Medtr7g101840.1 | RNA polymerase sigma factor | HC |
           chr7:41066429-41071150 | 20130731
          Length = 557

 Score =  556 bits (1434), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 304/571 (53%), Positives = 383/571 (67%), Gaps = 22/571 (3%)

Query: 7   IFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVLLQEQRD 66
           +F  S PFP R      LPS S   ++   +QAAP +SS  T+     FPTSVLLQE RD
Sbjct: 1   MFSPSTPFPSRI-----LPSPSV--MMPPHDQAAPALSSWPTT-----FPTSVLLQEHRD 48

Query: 67  EQRPLLHVSKED-KTCQAVLNARQVDMSLVHEE------NNIGKVDQVVDDFRQHLHLWP 119
           E +PLLH   ED K  QA LN R  DM+ + E+      +  G VD  V +    LHL  
Sbjct: 49  EYKPLLHTCNEDNKPPQATLNTRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRC 108

Query: 120 HLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLSRQALSPSKHEASVXXXXXX 179
           HLQNLL SS   +  +SS+    +    PA+    +A++L++QALS SK  A+V      
Sbjct: 109 HLQNLLASSPEEDFVSSSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKL 168

Query: 180 XXXXXXXXXXXXXXXXXPSRRSNKTVRSTRLLEXXXXXXXXXXXXXXDNDTYLARKDDPQ 239
                             S   NK VRS RL E              D++ YL +K + Q
Sbjct: 169 VKIDDDDSLPLGLADS--SLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQ 226

Query: 240 ERIRVKRKINEAFDQNDPQRLFLRSP-GKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQ 298
            R+R+++K+ E  D N   RLFL SP  K+LL IEEESQLI QIQDL KL+E K  LQS 
Sbjct: 227 RRLRLEKKLKEGLDGNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSH 286

Query: 299 FGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDL 358
           FGREPT+AEWA+G GL CR LQ +L CGNRS++KLI ANLR+V+H+AK YQGRGLSLQDL
Sbjct: 287 FGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDL 346

Query: 359 LQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKIL 418
           LQEGSMGL++SV+KFKPQ GCRF +YAYWWI+Q IR+A+F HS+TIRLPE  Y  LGKI 
Sbjct: 347 LQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIA 406

Query: 419 EAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITA 478
           EAKK YI+EGNL PTKE++A+RVGI+ D++  LL+  R P+SM++ VW D +TTFQEITA
Sbjct: 407 EAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITA 466

Query: 479 DTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSK 538
           D+SIE P+  V+K+LMR HV NLL  L PKER+++RLRFG EDG +KSL+E+G++ G+ K
Sbjct: 467 DSSIEIPNVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCK 526

Query: 539 ERVRQLENRAFYKLKKCLASQGLDAYADLLV 569
           ERVRQLE++A  KLK+CL SQ LDAY DL+V
Sbjct: 527 ERVRQLESQALNKLKQCLVSQQLDAYVDLIV 557


>Medtr3g118290.1 | RNA polymerase sigma factor | HC |
           chr3:55377817-55374030 | 20130731
          Length = 572

 Score =  242 bits (617), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 189/291 (64%)

Query: 274 EESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNRSREKL 333
           EE +    IQDL+KLE+L+  L  + G +PT A+WA  AG+  + L+ +L  G   +EK+
Sbjct: 279 EEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKM 338

Query: 334 IKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAI 393
           IK+N+R+V+ VAK YQG G+SLQDL+QEG  GL++  +K+    G +F +YA+WWIKQA+
Sbjct: 339 IKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAV 398

Query: 394 RKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLY 453
           RK++   SRTIRLP  +     K+ EA+K    E   +P  E++A   G+S  ++S++L 
Sbjct: 399 RKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLL 458

Query: 454 VARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRII 513
             + P S++Q V  +Q+    E+ AD   E+ +  + K+ M++ +  +L +L P+E+++I
Sbjct: 459 TPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVI 518

Query: 514 RLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAY 564
           + RFG +DG  K+L E+GE+ G+S+ER+RQ+E+ AF KLK    ++ L  Y
Sbjct: 519 KWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQY 569


>Medtr1g007370.1 | RNA polymerase sigma factor | HC |
           chr1:310765-306478 | 20130731
          Length = 549

 Score =  165 bits (418), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 186/324 (57%), Gaps = 15/324 (4%)

Query: 253 DQNDPQRL----FLR----SPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPT 304
           +Q DP R     F++    +  K+ +  + E ++   ++ L +LE+++T+++    +  +
Sbjct: 232 NQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVS 291

Query: 305 MAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSM 364
           ++ WAE +G+  + LQ +L  G   R++LI++   +VL+ A+ Y+G G++L+DLLQ G +
Sbjct: 292 LSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYI 351

Query: 365 GLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLY 424
           G+L+  ++F    G RF +Y  +WI++++ + +  ++R I +P  +   + +I +A+K+ 
Sbjct: 352 GVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVL 411

Query: 425 IQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIES 484
                  P   ++A+  G+S DKI S  +  R   SM + +       +     D SIES
Sbjct: 412 KNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGI------EYMGHMPDLSIES 465

Query: 485 PDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQ-KSLSEVGEIFGLSKERVRQ 543
           P+ +V K+ +++ + ++L +L  +ER+II LRFG  D  Q KSL  +G+IF +SKE +R+
Sbjct: 466 PEETVMKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRK 525

Query: 544 LENRAFYKLKKCLASQGLDAYADL 567
           +E +A  KL+       L+ Y DL
Sbjct: 526 IEKKALTKLRNETNISKLNYYLDL 549


>Medtr3g033420.1 | RNA polymerase sigma factor | HC |
           chr3:10685299-10683200 | 20130731
          Length = 403

 Score =  163 bits (412), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 135/238 (56%)

Query: 328 RSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYW 387
           +S+E+L +    +V  +A  YQG+GLS+QDL+QEG++GLL   +KF P  GC+  +Y YW
Sbjct: 165 KSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCKLSTYVYW 224

Query: 388 WIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDK 447
           WIKQ I KA+   SR IRLP + Y  + KI EA  +  +    +PT  ++A  + ++   
Sbjct: 225 WIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVST 284

Query: 448 ISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTLRP 507
           +  +   +R P+S+ +++    N   +EI        P+  V ++LM++ V+ LL+TL  
Sbjct: 285 VKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDK 344

Query: 508 KERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGLDAYA 565
           +E  I+RL FG       S  E+G++  LS+ER+RQ+   A  KL++      L  Y 
Sbjct: 345 REEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDSLKFYV 402


>Medtr0172s0030.1 | RNA polymerase sigma factor | HC |
           scaffold0172:25315-21123 | 20130731
          Length = 504

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 163/302 (53%), Gaps = 8/302 (2%)

Query: 268 KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGN 327
           +LL   E  +L  +I+  L L+E K+ L+ + G EP+  + A    +    L+ K+   +
Sbjct: 200 ELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRADLRAKIIECS 259

Query: 328 RSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYW 387
            +REKL  +N+R+VL +A+ Y   G  + DL+Q G +GLL+ ++KF    G +  +Y YW
Sbjct: 260 LAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 319

Query: 388 WIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDK 447
           WI+Q + +A+  +SRT+RLP  ++ +L  I  A +  ++E  + PT + +A+ + +S+ K
Sbjct: 320 WIRQGVSRALVENSRTLRLPAHLHERLSLIRNA-EYKLEERGITPTIDRIAKSLNMSQRK 378

Query: 448 ISSLLYVARIPMSMQQTVWTDQNT----TFQEITADTSIES-PDSSVSKELMRRHVLNLL 502
           + +         S+ +  +   N     T     AD   E+ P + V +  ++  V  L+
Sbjct: 379 VRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDEWALKEEVNRLI 438

Query: 503 S-TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGL 561
           + TL  +ER IIRL +G  D E  +  ++ +  GLS+ERVRQ+   A  KLK     + +
Sbjct: 439 NLTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 497

Query: 562 DA 563
           +A
Sbjct: 498 EA 499


>Medtr0172s0030.2 | RNA polymerase sigma factor | HC |
           scaffold0172:25892-20750 | 20130731
          Length = 504

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 163/302 (53%), Gaps = 8/302 (2%)

Query: 268 KLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGN 327
           +LL   E  +L  +I+  L L+E K+ L+ + G EP+  + A    +    L+ K+   +
Sbjct: 200 ELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRADLRAKIIECS 259

Query: 328 RSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYW 387
            +REKL  +N+R+VL +A+ Y   G  + DL+Q G +GLL+ ++KF    G +  +Y YW
Sbjct: 260 LAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYW 319

Query: 388 WIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDK 447
           WI+Q + +A+  +SRT+RLP  ++ +L  I  A +  ++E  + PT + +A+ + +S+ K
Sbjct: 320 WIRQGVSRALVENSRTLRLPAHLHERLSLIRNA-EYKLEERGITPTIDRIAKSLNMSQRK 378

Query: 448 ISSLLYVARIPMSMQQTVWTDQNT----TFQEITADTSIES-PDSSVSKELMRRHVLNLL 502
           + +         S+ +  +   N     T     AD   E+ P + V +  ++  V  L+
Sbjct: 379 VRNATEATSKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNVVDEWALKEEVNRLI 438

Query: 503 S-TLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQGL 561
           + TL  +ER IIRL +G  D E  +  ++ +  GLS+ERVRQ+   A  KLK     + +
Sbjct: 439 NLTLVEREREIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREM 497

Query: 562 DA 563
           +A
Sbjct: 498 EA 499


>Medtr3g090900.1 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279255 | 20130731
          Length = 514

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 144/288 (50%), Gaps = 5/288 (1%)

Query: 269 LLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNR 328
           +LP  E + L   +Q +  L ++K  LQ +  REPT  E A+   +    ++  +  G  
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275

Query: 329 SREKLIKANLRMVLHVAKTY---QGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYA 385
           +R KLIK NLR+VL V   Y          QDL Q G  GL+ S+ +F+P    R  +Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335

Query: 386 YWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISE 445
            +WI+ AI +++   S + R+P  + +   +I  AK     +    PT+E++  +V +S 
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSP 394

Query: 446 DKISSLLYVARIPMSMQQTVWTDQNTTFQEITADTSIESPDSSVSKELMRRHVLNLLSTL 505
           ++   ++  ++  +S+     T Q   F     D      D+     L+R  + ++L +L
Sbjct: 395 ERYRDVMKASKPLLSLHSRHLTTQE-EFINGVVDDGGVDGDNRRQPALLRLALDDVLDSL 453

Query: 506 RPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLK 553
           +PKE  +IR RFG +    ++L E+     +S+E VR+ E +A  KLK
Sbjct: 454 KPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLK 501


>Medtr1g007370.2 | RNA polymerase sigma factor | HC |
           chr1:310765-306479 | 20130731
          Length = 400

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 99/163 (60%), Gaps = 8/163 (4%)

Query: 253 DQNDPQRL----FLR----SPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPT 304
           +Q DP R     F++    +  K+ +  + E ++   ++ L +LE+++T+++    +  +
Sbjct: 232 NQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVS 291

Query: 305 MAEWAEGAGLKCRALQMKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSM 364
           ++ WAE +G+  + LQ +L  G   R++LI++   +VL+ A+ Y+G G++L+DLLQ G +
Sbjct: 292 LSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYI 351

Query: 365 GLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHHSRTIRLP 407
           G+L+  ++F    G RF +Y  +WI++++ + +  ++R I +P
Sbjct: 352 GVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVP 394


>Medtr3g090900.2 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279255 | 20130731
          Length = 459

 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 4/204 (1%)

Query: 269 LLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNR 328
           +LP  E + L   +Q +  L ++K  LQ +  REPT  E A+   +    ++  +  G  
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275

Query: 329 SREKLIKANLRMVLHVAKTY---QGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYA 385
           +R KLIK NLR+VL V   Y          QDL Q G  GL+ S+ +F+P    R  +Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335

Query: 386 YWWIKQAIRKAIFHHSRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISE 445
            +WI+ AI +++   S + R+P  + +   +I  AK     +    PT+E++  +V +S 
Sbjct: 336 LFWIRHAIIRSMTLASFS-RVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSP 394

Query: 446 DKISSLLYVARIPMSMQQTVWTDQ 469
           ++   ++  ++  +S+     T Q
Sbjct: 395 ERYRDVMKASKPLLSLHSRHLTTQ 418


>Medtr3g090900.3 | RNA polymerase sigma factor | HC |
           chr3:41274049-41279196 | 20130731
          Length = 403

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)

Query: 269 LLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQMKLRCGNR 328
           +LP  E + L   +Q +  L ++K  LQ +  REPT  E A+   +    ++  +  G  
Sbjct: 216 VLPSSEHAFLFKLMQPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRA 275

Query: 329 SREKLIKANLRMVLHVAKTY---QGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYA 385
           +R KLIK NLR+VL V   Y          QDL Q G  GL+ S+ +F+P    R  +Y+
Sbjct: 276 ARNKLIKHNLRLVLFVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYS 335

Query: 386 YWWIKQAIRKAI 397
            +WI+ AI +++
Sbjct: 336 LFWIRHAIIRSM 347


>Medtr3g033150.1 | RNA polymerase sigma factor | HC |
           chr3:10539070-10538516 | 20130731
          Length = 154

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%)

Query: 414 LGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTF 473
           + KI EA  +  +    +PT  ++A  + ++   +  +   +R P+S+ +++    N   
Sbjct: 2   VAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLIL 61

Query: 474 QEITADTSIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEI 533
           +EI        P+  V ++LM++ V+ LL+TL  +E  I+RL FG       S  E+G++
Sbjct: 62  KEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKL 121

Query: 534 FGLSKERVRQLENRAFYKLKKCLASQGLDAYA 565
             LS+ER+RQ+   A  KL++      L  Y 
Sbjct: 122 LKLSRERIRQIHGIALSKLRQNTIVDSLKFYV 153