Miyakogusa Predicted Gene

Lj5g3v0658310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0658310.1 CUFF.53651.1
         (355 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102590.1 | transcription initiation factor TFIID subunit-...   378   e-105
Medtr1g102590.2 | transcription initiation factor TFIID subunit-...   378   e-105
Medtr7g015100.2 | bromodomain transcription factor | HC | chr7:4...   201   9e-52
Medtr7g015100.1 | bromodomain transcription factor | HC | chr7:4...   201   9e-52
Medtr3g080510.1 | bromodomain associated protein | HC | chr3:364...   106   3e-23

>Medtr1g102590.1 | transcription initiation factor TFIID
           subunit-like protein | HC | chr1:46351056-46349992 |
           20130731
          Length = 354

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/360 (57%), Positives = 246/360 (68%), Gaps = 26/360 (7%)

Query: 5   KTLIPGSNMSHXXXXXXXXXXXXXXRTAAKVAVSQLCESQGFHAVRTSALDSLADVAIRY 64
           +TLIP S  ++              R+ AK+AV+QLCE+ GFHAV+ SAL+S +D+ IRY
Sbjct: 12  ETLIPSS--TNTITRARPSATDEFGRSTAKIAVAQLCEATGFHAVKDSALESFSDIVIRY 69

Query: 65  LVDLGKIAELYANLSGRSHCSVFDLIRGFEDLEAPRGFSGGAGLKEIVNYVEAVDEVPFA 124
           L+D  K A+ Y+NL+GRS C+VFDL+R +EDL+AP GFS G  +KEI+NY E++ E PFA
Sbjct: 70  LIDFSKTAKFYSNLAGRSQCTVFDLLRAWEDLQAPLGFSNG--MKEIMNYAESMPETPFA 127

Query: 125 QPIPQFPVIRERRSIPSFDQMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDK 184
           QPIP FPVIRER+ IPSF QMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDK
Sbjct: 128 QPIPNFPVIRERKIIPSFIQMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDK 187

Query: 185 IEQARQRRKAEXXXXXXXXXXXXCNGSAEXXXXXXXXXXXXXXPTGVAMDPGRADKDVS- 243
           +EQARQRRKAE            CNG+                 T    DP   D+DV+ 
Sbjct: 188 VEQARQRRKAERSLLNLQKRLLLCNGNRNRNESTET--------TTTGSDP---DEDVAP 236

Query: 244 ---PVKIPAVSDGSRVSVLEAFAPAIEVLGSSS-LCDDDG-VEG-RMVVPA--ARPTVHF 295
              PVK+P V DG RVSVLEAFAPAIE LG    LCDDD  ++G + V+PA  ARPTVHF
Sbjct: 237 AVLPVKLPIV-DGDRVSVLEAFAPAIEKLGGGGVLCDDDDEIDGEKTVIPAATARPTVHF 295

Query: 296 KFRTGKKLIGESLDARLQKKDAASRAASLGGXXXXXXXXXXXAEYILRQSIENPQELTLL 355
           KF++GKK IGESLD R +K+DA      L G           AEYILRQS+EN QELTLL
Sbjct: 296 KFKSGKKFIGESLDDRNKKRDAL-HTIFLVGREDERDDKKRRAEYILRQSMENRQELTLL 354


>Medtr1g102590.2 | transcription initiation factor TFIID
           subunit-like protein | HC | chr1:46351056-46349992 |
           20130731
          Length = 354

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/360 (57%), Positives = 246/360 (68%), Gaps = 26/360 (7%)

Query: 5   KTLIPGSNMSHXXXXXXXXXXXXXXRTAAKVAVSQLCESQGFHAVRTSALDSLADVAIRY 64
           +TLIP S  ++              R+ AK+AV+QLCE+ GFHAV+ SAL+S +D+ IRY
Sbjct: 12  ETLIPSS--TNTITRARPSATDEFGRSTAKIAVAQLCEATGFHAVKDSALESFSDIVIRY 69

Query: 65  LVDLGKIAELYANLSGRSHCSVFDLIRGFEDLEAPRGFSGGAGLKEIVNYVEAVDEVPFA 124
           L+D  K A+ Y+NL+GRS C+VFDL+R +EDL+AP GFS G  +KEI+NY E++ E PFA
Sbjct: 70  LIDFSKTAKFYSNLAGRSQCTVFDLLRAWEDLQAPLGFSNG--MKEIMNYAESMPETPFA 127

Query: 125 QPIPQFPVIRERRSIPSFDQMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDK 184
           QPIP FPVIRER+ IPSF QMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDK
Sbjct: 128 QPIPNFPVIRERKIIPSFIQMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDK 187

Query: 185 IEQARQRRKAEXXXXXXXXXXXXCNGSAEXXXXXXXXXXXXXXPTGVAMDPGRADKDVS- 243
           +EQARQRRKAE            CNG+                 T    DP   D+DV+ 
Sbjct: 188 VEQARQRRKAERSLLNLQKRLLLCNGNRNRNESTET--------TTTGSDP---DEDVAP 236

Query: 244 ---PVKIPAVSDGSRVSVLEAFAPAIEVLGSSS-LCDDDG-VEG-RMVVPA--ARPTVHF 295
              PVK+P V DG RVSVLEAFAPAIE LG    LCDDD  ++G + V+PA  ARPTVHF
Sbjct: 237 AVLPVKLPIV-DGDRVSVLEAFAPAIEKLGGGGVLCDDDDEIDGEKTVIPAATARPTVHF 295

Query: 296 KFRTGKKLIGESLDARLQKKDAASRAASLGGXXXXXXXXXXXAEYILRQSIENPQELTLL 355
           KF++GKK IGESLD R +K+DA      L G           AEYILRQS+EN QELTLL
Sbjct: 296 KFKSGKKFIGESLDDRNKKRDAL-HTIFLVGREDERDDKKRRAEYILRQSMENRQELTLL 354


>Medtr7g015100.2 | bromodomain transcription factor | HC |
           chr7:4551939-4553090 | 20130731
          Length = 383

 Score =  201 bits (511), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 185/357 (51%), Gaps = 37/357 (10%)

Query: 30  RTAAKVAVSQLCESQGFHAVRTSALDSLADVAIRYLVDLGKIAELYANLSGRSHCSVFDL 89
           ++ AKVAV+Q+CES+GF   + SAL++++DV  RY++++GK A  YANL+GR+ C+VFD+
Sbjct: 33  QSIAKVAVAQVCESKGFQGFQQSALEAMSDVTARYIMNIGKSANCYANLAGRNECNVFDV 92

Query: 90  IRGFEDLEAPRGFSGGAGL----------KEIVNYVEAVDEVPFAQPIPQFPVIRERRSI 139
           I+G ED+ + +GF+G + +          +EIV +V  V+ V FA PIP FPV++ER   
Sbjct: 93  IQGLEDMGSMQGFTGASDIDHWLEDSGVVREIVQFVNEVEPVMFAHPIPPFPVVKERVLP 152

Query: 140 PSFDQMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDKIEQARQRRKAEXXXX 199
           PSF Q G+ PP +HIPAWLPA PDP TY+ +   + R ++PR    E  R+  K +    
Sbjct: 153 PSFLQRGKEPPDEHIPAWLPAFPDPETYLQSTTVNGRGTEPRTTTFEHERENGKGDRPLL 212

Query: 200 XXXXXXXXCNGSAEXXXXXXXXXXXXXXPTGVAMDPGRA------DKDVSPVKIPA---- 249
                      +                  G   +P  A      DK+VS V  PA    
Sbjct: 213 NSQQQMV---STMFENSTMVDPAVAKAKIVGAESNPFLAAPLKIEDKEVSSVAPPAKFFN 269

Query: 250 -VSDGSRV----------SVLEAFAPAIEVLGSSSLCDDDGVEGRMVVPAARPTVHFKFR 298
            VS  + V          SVLE FAPAIE + S+S CD    + +  V   +PTV FK  
Sbjct: 270 NVSSDTPVGENLIQNEPGSVLETFAPAIEAINSAS-CDSKEDQTKFPV-KEKPTVRFKVG 327

Query: 299 TGKKLIGESLDARLQKKDAASRAASLGGXXXXXXXXXXXAEYILRQSIENPQELTLL 355
           T  K +G S+   + + +   +                 AE ILR+S+ENP +L  L
Sbjct: 328 TKNKFLGRSI-GLIPQNEEHKKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL 383


>Medtr7g015100.1 | bromodomain transcription factor | HC |
           chr7:4551939-4553090 | 20130731
          Length = 383

 Score =  201 bits (511), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 185/357 (51%), Gaps = 37/357 (10%)

Query: 30  RTAAKVAVSQLCESQGFHAVRTSALDSLADVAIRYLVDLGKIAELYANLSGRSHCSVFDL 89
           ++ AKVAV+Q+CES+GF   + SAL++++DV  RY++++GK A  YANL+GR+ C+VFD+
Sbjct: 33  QSIAKVAVAQVCESKGFQGFQQSALEAMSDVTARYIMNIGKSANCYANLAGRNECNVFDV 92

Query: 90  IRGFEDLEAPRGFSGGAGL----------KEIVNYVEAVDEVPFAQPIPQFPVIRERRSI 139
           I+G ED+ + +GF+G + +          +EIV +V  V+ V FA PIP FPV++ER   
Sbjct: 93  IQGLEDMGSMQGFTGASDIDHWLEDSGVVREIVQFVNEVEPVMFAHPIPPFPVVKERVLP 152

Query: 140 PSFDQMGETPPGKHIPAWLPALPDPHTYIHTPVWDERVSDPREDKIEQARQRRKAEXXXX 199
           PSF Q G+ PP +HIPAWLPA PDP TY+ +   + R ++PR    E  R+  K +    
Sbjct: 153 PSFLQRGKEPPDEHIPAWLPAFPDPETYLQSTTVNGRGTEPRTTTFEHERENGKGDRPLL 212

Query: 200 XXXXXXXXCNGSAEXXXXXXXXXXXXXXPTGVAMDPGRA------DKDVSPVKIPA---- 249
                      +                  G   +P  A      DK+VS V  PA    
Sbjct: 213 NSQQQMV---STMFENSTMVDPAVAKAKIVGAESNPFLAAPLKIEDKEVSSVAPPAKFFN 269

Query: 250 -VSDGSRV----------SVLEAFAPAIEVLGSSSLCDDDGVEGRMVVPAARPTVHFKFR 298
            VS  + V          SVLE FAPAIE + S+S CD    + +  V   +PTV FK  
Sbjct: 270 NVSSDTPVGENLIQNEPGSVLETFAPAIEAINSAS-CDSKEDQTKFPV-KEKPTVRFKVG 327

Query: 299 TGKKLIGESLDARLQKKDAASRAASLGGXXXXXXXXXXXAEYILRQSIENPQELTLL 355
           T  K +G S+   + + +   +                 AE ILR+S+ENP +L  L
Sbjct: 328 TKNKFLGRSI-GLIPQNEEHKKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL 383


>Medtr3g080510.1 | bromodomain associated protein | HC |
           chr3:36430247-36427134 | 20130731
          Length = 318

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 18/153 (11%)

Query: 33  AKVAVSQLCESQGFHAVRTSALDSLADVAIRYLVDLGKIAELYANLSGRSHCSVFDLIRG 92
           AK AVSQ+C S G+   + +AL++L +V  +Y+  + + A  +AN S R+  + FDLI G
Sbjct: 47  AKTAVSQICRSVGYKRSKFNALEALTNVTTKYIEAIARSAASFANASNRTESNFFDLING 106

Query: 93  FEDLEAPRGFSGG-----------AGLKEIVNYVEAVDEVPFAQPIP-------QFPVIR 134
             DL + RGF+GG           A LKEIV++V+  ++VPF++PIP       Q P I 
Sbjct: 107 IHDLCSVRGFTGGSKTHKSNLLKSAALKEIVDFVKFSNQVPFSKPIPSKNVCGSQNPEIT 166

Query: 135 ERRSIPSFDQMGETPPGKHIPAWLPALPDPHTY 167
                P +        G HIP WLP  P    Y
Sbjct: 167 IESGTPIYCSENTKTQGLHIPRWLPDFPSESLY 199