Miyakogusa Predicted Gene

Lj5g3v0630280.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0630280.2 Non Characterized Hit- tr|J3LIJ8|J3LIJ8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G4,54.22,3e-19,seg,NULL,CUFF.53613.2
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g063000.1 | transmembrane protein, putative | HC | chr1:27...   109   6e-25
Medtr1g063000.2 | transmembrane protein, putative | HC | chr1:27...   102   6e-23
Medtr7g102320.1 | transmembrane protein, putative | HC | chr7:41...    77   3e-15
Medtr7g102320.4 | transmembrane protein, putative | HC | chr7:41...    77   3e-15
Medtr7g102320.2 | transmembrane protein, putative | HC | chr7:41...    77   4e-15
Medtr7g102320.3 | transmembrane protein, putative | HC | chr7:41...    77   4e-15

>Medtr1g063000.1 | transmembrane protein, putative | HC |
          chr1:27682032-27680041 | 20130731
          Length = 83

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 59/83 (71%)

Query: 1  MVCVACLLPLFLVPIINLLPLLFDFLMAKIYRVFGWEYRKPERAPPACPYKPSANGVSKQ 60
          MVC+ CL+PLFLVPI+N LPLLFDFLM KIY  FGWEYRKPER PPACP KPS   ++KQ
Sbjct: 1  MVCLVCLVPLFLVPIVNFLPLLFDFLMGKIYAAFGWEYRKPERVPPACPIKPSNKTINKQ 60

Query: 61 XXXXXXXXXXXXVKPESVNVKED 83
                       KP SV+VK+D
Sbjct: 61 DEVSVGPSPTEPTKPGSVDVKQD 83


>Medtr1g063000.2 | transmembrane protein, putative | HC |
          chr1:27682077-27679995 | 20130731
          Length = 82

 Score =  102 bits (255), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 58/83 (69%), Gaps = 1/83 (1%)

Query: 1  MVCVACLLPLFLVPIINLLPLLFDFLMAKIYRVFGWEYRKPERAPPACPYKPSANGVSKQ 60
          MVC+ CL+PLFLVPI+N LPLLFDFLM KIY  FGWEYRKPER PPACP KPS   ++K 
Sbjct: 1  MVCLVCLVPLFLVPIVNFLPLLFDFLMGKIYAAFGWEYRKPERVPPACPIKPSNKTINKD 60

Query: 61 XXXXXXXXXXXXVKPESVNVKED 83
                       KP SV+VK+D
Sbjct: 61 -EVSVGPSPTEPTKPGSVDVKQD 82


>Medtr7g102320.1 | transmembrane protein, putative | HC |
          chr7:41294292-41297198 | 20130731
          Length = 82

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 41/47 (87%)

Query: 13 VPIINLLPLLFDFLMAKIYRVFGWEYRKPERAPPACPYKPSANGVSK 59
          VPI+N+LP+LF +LM K+YR+FGWEYRKPE APPACPYKP+A   SK
Sbjct: 13 VPIVNVLPILFYYLMGKVYRLFGWEYRKPEIAPPACPYKPAAQKDSK 59


>Medtr7g102320.4 | transmembrane protein, putative | HC |
          chr7:41294292-41297198 | 20130731
          Length = 71

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 41/47 (87%)

Query: 13 VPIINLLPLLFDFLMAKIYRVFGWEYRKPERAPPACPYKPSANGVSK 59
          VPI+N+LP+LF +LM K+YR+FGWEYRKPE APPACPYKP+A   SK
Sbjct: 13 VPIVNVLPILFYYLMGKVYRLFGWEYRKPEIAPPACPYKPAAQKDSK 59


>Medtr7g102320.2 | transmembrane protein, putative | HC |
          chr7:41294372-41297128 | 20130731
          Length = 61

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 13 VPIINLLPLLFDFLMAKIYRVFGWEYRKPERAPPACPYKPSANGVSKQ 60
          VPI+N+LP+LF +LM K+YR+FGWEYRKPE APPACPYKP+A   SK 
Sbjct: 13 VPIVNVLPILFYYLMGKVYRLFGWEYRKPEIAPPACPYKPAAQKDSKD 60


>Medtr7g102320.3 | transmembrane protein, putative | HC |
          chr7:41294292-41297198 | 20130731
          Length = 61

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 13 VPIINLLPLLFDFLMAKIYRVFGWEYRKPERAPPACPYKPSANGVSKQ 60
          VPI+N+LP+LF +LM K+YR+FGWEYRKPE APPACPYKP+A   SK 
Sbjct: 13 VPIVNVLPILFYYLMGKVYRLFGWEYRKPEIAPPACPYKPAAQKDSKD 60