Miyakogusa Predicted Gene

Lj5g3v0626540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0626540.1 Non Characterized Hit- tr|D8SL01|D8SL01_SELML
Putative uncharacterized protein OS=Selaginella
moelle,31.67,0.0000000000002,seg,NULL; coiled-coil,NULL,CUFF.53543.1
         (354 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106030.1 | hypothetical protein | HC | chr3:48901092-4889...    55   1e-07

>Medtr3g106030.1 | hypothetical protein | HC |
           chr3:48901092-48898190 | 20130731
          Length = 385

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 29/239 (12%)

Query: 95  GNSLFSLGLSFGIMFMMSARKAEIDELNKTMDETAKLVQELKSELNRR----KSSRAHEN 150
            N+ F LG+  G++++++  K E+ ++ +   E   ++Q +K EL  +    KS +  ++
Sbjct: 127 NNTSFKLGVGCGLLYVIATTKNELSKMVELRKEMEIILQNMKGELQSKDVLVKSLKQCDD 186

Query: 151 LDSVGNSDMNSRKMSGRHELMLTK---TNSELRDSGECG---SSTLTEESEPGVLEMDQL 204
             +   +D+     S  H  + ++      EL+ +  C       ++E+ E    E++ L
Sbjct: 187 ALAFSITDIQEVSCSSSHPSINSQKPYVQLELKCNTVCDRFLEYDISEQDE-CAEEINDL 245

Query: 205 EAELEFELQKLSGCTIDSHRHEEIKPELEKLDSDGTD----------------DWDFNYS 248
           +AE E+ELQ+L    +D+    E  P+ E+++    D                  + +Y 
Sbjct: 246 QAEFEYELQRLQ-LYLDAEDAFEDAPQ-ERVEVAVNDSSSKSESSSFGEIIMEPQEASYD 303

Query: 249 QSHGVSASELNQKLSQLLIKQQEDQITELESELHQAQSKLHEKEAELQALKDCVKRLTE 307
            S GV   EL ++L +LL  + +++I ELES L  A  KL+EKE      +D  +R+ +
Sbjct: 304 MSFGVPPVELERRLHELLETRLQERIVELESALEYATQKLNEKEIRSSWWEDSARRIPD 362