Miyakogusa Predicted Gene

Lj5g3v0626530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0626530.1 Non Characterized Hit- tr|I3SF84|I3SF84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.73,3.99931e-42,no description,NULL; Sm-like
ribonucleoproteins,Like-Sm (LSM) domain; LSM,Ribonucleoprotein LSM
doma,CUFF.53550.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g072530.1 | small nuclear ribonucleoprotein | HC | chr5:30...   177   3e-45
Medtr2g104440.1 | small nuclear ribonucleoprotein | HC | chr2:44...   177   3e-45
Medtr4g094600.1 | u6 snRNA-associated-like-Smprotein | HC | chr4...    48   2e-06

>Medtr5g072530.1 | small nuclear ribonucleoprotein | HC |
          chr5:30881816-30885244 | 20130731
          Length = 88

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          NVKKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88


>Medtr2g104440.1 | small nuclear ribonucleoprotein | HC |
          chr2:44988145-44990288 | 20130731
          Length = 88

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
          NVKKKS+KTLGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88


>Medtr4g094600.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr4:38346646-38342453 | 20130731
          Length = 87

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83