Miyakogusa Predicted Gene

Lj5g3v0616120.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0616120.4 Non Characterized Hit- tr|I1L8R3|I1L8R3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45028
PE,73.38,0,RRM_5,NULL; RNA recognition motif,RNA recognition motif
domain, eukaryote; RNA recognition motif,RNA,CUFF.53517.4
         (529 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   745   0.0  
Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   431   e-120
Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein...   431   e-120
Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   431   e-120
Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   424   e-118
Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein...   424   e-118
Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   424   e-118
Medtr6g008950.1 | anti-virus transcriptional factor, putative | ...    62   2e-09

>Medtr1g066970.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
           putative | HC | chr1:28798997-28807271 | 20130731
          Length = 908

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/538 (70%), Positives = 427/538 (79%), Gaps = 15/538 (2%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           MGDKG KSCPICTEEMDLTDQ LKPCKCGYEICVWCWHHIMEMA K+E+EGRCPACRSPY
Sbjct: 1   MGDKGGKSCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK+RI +MAANCRRLVAEMN               DGRKHL DVRVIQR+LVYIIGLPL+
Sbjct: 61  DKERIVAMAANCRRLVAEMNSKKKIPKLKPKSS--DGRKHLTDVRVIQRNLVYIIGLPLH 118

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQRREYFGRYGKV+KVSISRTATG+ QHSANN CCVYI+YSKESEAVRCIQSVH
Sbjct: 119 LADEDLLQRREYFGRYGKVLKVSISRTATGVIQHSANNICCVYITYSKESEAVRCIQSVH 178

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            FVLEGR LRACFGTTKYCHAWLRNVPC+NR+CLYLHDHG+HEDSFTKDELVLAFARSRV
Sbjct: 179 FFVLEGRSLRACFGTTKYCHAWLRNVPCSNRDCLYLHDHGAHEDSFTKDELVLAFARSRV 238

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALP 302
           LQIIGATNNL+R SGSVLPPP DD +H+SSATK+VSKS  DNQIK SCS  GAAN TALP
Sbjct: 239 LQIIGATNNLNRPSGSVLPPPPDDPKHVSSATKVVSKSSLDNQIKESCSSNGAANSTALP 298

Query: 303 AVTSWARCVSGSLRQDSTSS--RSNNLANRKVEASNDPQALVGVACTERSTLN-KRSGEA 359
           A  SWARCVSGSL +D++SS  R+ NL NRK+EAS D QAL GVACTERS  + K+SGE 
Sbjct: 299 AANSWARCVSGSLPKDTSSSSLRAGNLVNRKIEASIDSQALPGVACTERSIRDTKKSGEV 358

Query: 360 EDSSKVHS-NDVFIPSELNKHLHIGGNSQTPFMGSDQDMVAPSVSESFPELSRSHCDFST 418
           +DSS VHS N V +PSELNKH HIGGNSQT  +G  Q+  APSVS SF E++  H D +T
Sbjct: 359 KDSSDVHSTNSVSVPSELNKH-HIGGNSQTSSVGLGQEKAAPSVSTSFLEITGPH-DLNT 416

Query: 419 NKAVSNRDVQXXXXXXXXXXXXXHLEDSNFTPDSDRLLSTQNSINSSVGKH-SEDNEYWN 477
           NKAVSNRDV              H+EDS FT DSDR+L T NS + S GKH  +DNEY  
Sbjct: 417 NKAVSNRDVPGSCSELSSVSINSHVEDSYFTRDSDRILFTPNSTDPSSGKHLHQDNEYCK 476

Query: 478 EQSTIPAFWEDIVVDDVLNIDQEPQNFSKSINN------SPCLSQNVNKSTHQAEPQD 529
           + ST PAFWEDI+VDD+LN D + Q   K  +N      SP   QN+++S+H  + ++
Sbjct: 477 DHSTTPAFWEDIIVDDMLNKDCDQQQHCKGSDNLASRHYSPHCPQNLSQSSHHLKQEN 534


>Medtr2g093100.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 194/300 (64%), Positives = 237/300 (79%), Gaps = 2/300 (0%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D+GE++CP+C EEMDLTDQQL+PCKCGY+ICVWCWHHIM+MA+K+E+EGRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  MAANC RLVAE++               DGRK L++VRVI+R+LVYI+GLPL+
Sbjct: 61  DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQRREYFG+YGKV+KVS+SRTA G+ Q   NNTC VYI+YSKE EA+RCIQ+VH
Sbjct: 121 LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            FVLE RPLRACFGTTKYCHAWLRN+PC+N +C+YLH+ GS EDSFTKDE+V A+ RS +
Sbjct: 181 GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI 240

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALP 302
            QI GA  N+ RRSG+VLPPP+DD    +S    V K+ S N + G+  G     + A P
Sbjct: 241 QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTV-KNSSSNSV-GTARGLPPNGIPAKP 298


>Medtr2g093100.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 194/300 (64%), Positives = 237/300 (79%), Gaps = 2/300 (0%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D+GE++CP+C EEMDLTDQQL+PCKCGY+ICVWCWHHIM+MA+K+E+EGRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  MAANC RLVAE++               DGRK L++VRVI+R+LVYI+GLPL+
Sbjct: 61  DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQRREYFG+YGKV+KVS+SRTA G+ Q   NNTC VYI+YSKE EA+RCIQ+VH
Sbjct: 121 LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            FVLE RPLRACFGTTKYCHAWLRN+PC+N +C+YLH+ GS EDSFTKDE+V A+ RS +
Sbjct: 181 GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI 240

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALP 302
            QI GA  N+ RRSG+VLPPP+DD    +S    V K+ S N + G+  G     + A P
Sbjct: 241 QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTV-KNSSSNSV-GTARGLPPNGIPAKP 298


>Medtr2g093100.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr2:39662303-39653214 | 20130731
          Length = 1007

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 194/300 (64%), Positives = 237/300 (79%), Gaps = 2/300 (0%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D+GE++CP+C EEMDLTDQQL+PCKCGY+ICVWCWHHIM+MA+K+E+EGRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDETEGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I  MAANC RLVAE++               DGRK L++VRVI+R+LVYI+GLPL+
Sbjct: 61  DKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSDGRKQLSNVRVIRRNLVYIVGLPLD 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQRREYFG+YGKV+KVS+SRTA G+ Q   NNTC VYI+YSKE EA+RCIQ+VH
Sbjct: 121 LADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            FVLE RPLRACFGTTKYCHAWLRN+PC+N +C+YLH+ GS EDSFTKDE+V A+ RS +
Sbjct: 181 GFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHI 240

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALP 302
            QI GA  N+ RRSG+VLPPP+DD    +S    V K+ S N + G+  G     + A P
Sbjct: 241 QQITGAVTNMERRSGNVLPPPLDDCTSNTSGKPTV-KNSSSNSV-GTARGLPPNGIPAKP 298


>Medtr4g061180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596011-22605283 | 20130731
          Length = 1042

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 187/308 (60%), Positives = 235/308 (76%), Gaps = 3/308 (0%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D+GE++CP+C EEMDLTDQQLKPC+CGYEICVWCWHHIM+MA+K++++GRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I   AA C RL+ EMN               DGRK L+ VRVIQR+LVYI+GLPL+
Sbjct: 61  DKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLD 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQ+REYFG+YGKV+KVS+SRTA G+ Q   N TC VYI+YS E E++RCIQ+VH
Sbjct: 121 LADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+LEGRPLRACFGTTKYCHAWLRN PC N +CLYLH+ GS EDSFTKDE++ A+  SRV
Sbjct: 181 GFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYT-SRV 239

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN--QIKGSCSGTGAANLTA 300
            QI G TN++ RRSG+VLPPP+DD  + S+   +V  +P+++   ++ S          +
Sbjct: 240 QQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVS 299

Query: 301 LPAVTSWA 308
           LP   +W 
Sbjct: 300 LPTSAAWG 307


>Medtr4g061180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596005-22605283 | 20130731
          Length = 1042

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 187/308 (60%), Positives = 235/308 (76%), Gaps = 3/308 (0%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D+GE++CP+C EEMDLTDQQLKPC+CGYEICVWCWHHIM+MA+K++++GRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I   AA C RL+ EMN               DGRK L+ VRVIQR+LVYI+GLPL+
Sbjct: 61  DKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLD 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQ+REYFG+YGKV+KVS+SRTA G+ Q   N TC VYI+YS E E++RCIQ+VH
Sbjct: 121 LADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+LEGRPLRACFGTTKYCHAWLRN PC N +CLYLH+ GS EDSFTKDE++ A+  SRV
Sbjct: 181 GFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYT-SRV 239

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN--QIKGSCSGTGAANLTA 300
            QI G TN++ RRSG+VLPPP+DD  + S+   +V  +P+++   ++ S          +
Sbjct: 240 QQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVS 299

Query: 301 LPAVTSWA 308
           LP   +W 
Sbjct: 300 LPTSAAWG 307


>Medtr4g061180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:22596008-22605283 | 20130731
          Length = 1042

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 187/308 (60%), Positives = 235/308 (76%), Gaps = 3/308 (0%)

Query: 3   MGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPY 62
           M D+GE++CP+C EEMDLTDQQLKPC+CGYEICVWCWHHIM+MA+K++++GRCPACRSPY
Sbjct: 1   MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPY 60

Query: 63  DKDRITSMAANCRRLVAEMNXXXXXXXXXXXXXXXDGRKHLNDVRVIQRHLVYIIGLPLN 122
           DK++I   AA C RL+ EMN               DGRK L+ VRVIQR+LVYI+GLPL+
Sbjct: 61  DKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLD 120

Query: 123 LADEDLLQRREYFGRYGKVMKVSISRTATGLFQHSANNTCCVYISYSKESEAVRCIQSVH 182
           LADEDLLQ+REYFG+YGKV+KVS+SRTA G+ Q   N TC VYI+YS E E++RCIQ+VH
Sbjct: 121 LADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVH 180

Query: 183 CFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARSRV 242
            F+LEGRPLRACFGTTKYCHAWLRN PC N +CLYLH+ GS EDSFTKDE++ A+  SRV
Sbjct: 181 GFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYT-SRV 239

Query: 243 LQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDN--QIKGSCSGTGAANLTA 300
            QI G TN++ RRSG+VLPPP+DD  + S+   +V  +P+++   ++ S          +
Sbjct: 240 QQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVS 299

Query: 301 LPAVTSWA 308
           LP   +W 
Sbjct: 300 LPTSAAWG 307


>Medtr6g008950.1 | anti-virus transcriptional factor, putative | HC
           | chr6:2516081-2513329 | 20130731
          Length = 313

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 6/53 (11%)

Query: 11  CPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYD 63
           CPIC E++D+TD +  PC CG+ +C++C   I+      E++GRCP CR  YD
Sbjct: 240 CPICYEDLDVTDSEFLPCSCGFHLCLFCHKKIV------EADGRCPGCRKLYD 286