Miyakogusa Predicted Gene

Lj5g3v0615780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0615780.1 Non Characterized Hit- tr|B9SGS6|B9SGS6_RICCO
Zinc finger protein, putative OS=Ricinus communis
GN=R,80.73,0,seg,NULL; CCCH zinc finger,NULL; zinc finger,Zinc finger,
CCCH-type; coiled-coil,NULL; SUBFAMILY NOT,CUFF.53485.1
         (324 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g067020.2 | zinc finger (CCCH-type) family protein | HC | ...   452   e-127
Medtr1g067020.1 | zinc finger (CCCH-type) family protein | HC | ...   452   e-127
Medtr6g078970.1 | hypothetical protein | HC | chr6:29710582-2970...    74   2e-13

>Medtr1g067020.2 | zinc finger (CCCH-type) family protein | HC |
           chr1:28837991-28833208 | 20130731
          Length = 361

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/298 (74%), Positives = 239/298 (80%), Gaps = 1/298 (0%)

Query: 1   MPPXXXXXXXXXXXXXXXXXTFGLKNKNKSKAVQKYVQNLKSSVQPKTDPKIXXXXXXXX 60
           MPP                 TFGLKNKNKSKAVQKYVQNLKSSVQP+TDPK         
Sbjct: 1   MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEE 60

Query: 61  XXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEK 120
                  LNDLFKIAVSQPKVP GVDPKS+LCEFFKVGQCAKGFKCKFSHDLNVQRKGEK
Sbjct: 61  EKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEK 120

Query: 121 IDIYSDQRDDEDTMEDWDQATLEKVVESKKNEFNQNKQTDIVCKYFLDAVEKKQYGWFWE 180
           IDIYSD+RDD DTME+WDQ TLEKVVESKKNE+NQNK TDIVCK+FLDAVE+KQYGWFW 
Sbjct: 121 IDIYSDKRDD-DTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWS 179

Query: 181 CPNGGKNCHYRHALPPGYVLKSQMKALLDXXXXXXXXXXXXXNQRAKVATTTPMTTELFF 240
           CPNGGKNC YRHALPPGYVLKSQMKALL+              QR++V TTTP+TTELF+
Sbjct: 180 CPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFY 239

Query: 241 QWRKKKTEERDAKLASQQAERAKNDRMSGRELFLSDASLFVDDDEAYDQYQREPETEQ 298
           QW+KKK +ERDA LA+QQAERAKNDRMSGRELFLS+ASLFVDD EAYD YQREPE ++
Sbjct: 240 QWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDE 297


>Medtr1g067020.1 | zinc finger (CCCH-type) family protein | HC |
           chr1:28837991-28833208 | 20130731
          Length = 361

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/298 (74%), Positives = 239/298 (80%), Gaps = 1/298 (0%)

Query: 1   MPPXXXXXXXXXXXXXXXXXTFGLKNKNKSKAVQKYVQNLKSSVQPKTDPKIXXXXXXXX 60
           MPP                 TFGLKNKNKSKAVQKYVQNLKSSVQP+TDPK         
Sbjct: 1   MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEE 60

Query: 61  XXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEK 120
                  LNDLFKIAVSQPKVP GVDPKS+LCEFFKVGQCAKGFKCKFSHDLNVQRKGEK
Sbjct: 61  EKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEK 120

Query: 121 IDIYSDQRDDEDTMEDWDQATLEKVVESKKNEFNQNKQTDIVCKYFLDAVEKKQYGWFWE 180
           IDIYSD+RDD DTME+WDQ TLEKVVESKKNE+NQNK TDIVCK+FLDAVE+KQYGWFW 
Sbjct: 121 IDIYSDKRDD-DTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWS 179

Query: 181 CPNGGKNCHYRHALPPGYVLKSQMKALLDXXXXXXXXXXXXXNQRAKVATTTPMTTELFF 240
           CPNGGKNC YRHALPPGYVLKSQMKALL+              QR++V TTTP+TTELF+
Sbjct: 180 CPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFY 239

Query: 241 QWRKKKTEERDAKLASQQAERAKNDRMSGRELFLSDASLFVDDDEAYDQYQREPETEQ 298
           QW+KKK +ERDA LA+QQAERAKNDRMSGRELFLS+ASLFVDD EAYD YQREPE ++
Sbjct: 240 QWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDE 297


>Medtr6g078970.1 | hypothetical protein | HC |
           chr6:29710582-29709362 | 20130731
          Length = 109

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 59/115 (51%), Gaps = 41/115 (35%)

Query: 185 GKNCHYRHALPPGYVLKSQMKALLDXXXXXXXXXXXXXNQRAKVATTTPMTTELFFQWRK 244
           GKNC YRHALPPG + ++                       ++V T TP+T +LF+Q +K
Sbjct: 5   GKNCIYRHALPPGRISENC----------------------SQVNTATPITPKLFYQCKK 42

Query: 245 KKTEERDAKLASQQAERAKNDRMSGRELFLSDASLFVDDDEAYDQYQREP-ETEQ 298
           KK  +                    RELFLS+ASLFV D EAYD YQR+P ETEQ
Sbjct: 43  KKIGQ------------------ESRELFLSNASLFVHDAEAYDNYQRQPDETEQ 79