Miyakogusa Predicted Gene

Lj5g3v0614510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0614510.1 tr|Q075K5|Q075K5_PROWI Plastid ArgJ (Fragment)
OS=Prototheca wickerhamii PE=2 SV=1,56.98,3e-18,ArgJ,Arginine
biosynthesis protein ArgJ; Q3C251_CITLA_Q3C251;,Arginine biosynthesis
protein ArgJ; Dm,gene.g59320.t1.1
         (131 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g068845.1 | arginine biosynthesis protein ArgJ | HC | chr1...   192   8e-50

>Medtr1g068845.1 | arginine biosynthesis protein ArgJ | HC |
           chr1:29434869-29427365 | 20130731
          Length = 470

 Score =  192 bits (488), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 109/133 (81%), Gaps = 14/133 (10%)

Query: 1   MYSCVVVPHPIFLH-----KTSLNPK--IFTS--MRIRAMS---NQPSTYIPAAPIFLPE 48
           MYSC+  PH + LH      TS N K  +F S  ++IRA+S   NQ STYIPAAPIFLP+
Sbjct: 1   MYSCI--PHNVSLHFHFSTTTSPNSKSTMFASRNLKIRAVSTTENQASTYIPAAPIFLPQ 58

Query: 49  GPWNQIPGGVTAAEGFKAAGMYGGLRAVGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVL 108
           GPW QIPGGVTAAEGFKAAG+YGGLRAVGEKPDLALVTCDVDA+SAGSFTTNVVAAAPVL
Sbjct: 59  GPWKQIPGGVTAAEGFKAAGIYGGLRAVGEKPDLALVTCDVDAISAGSFTTNVVAAAPVL 118

Query: 109 YCKKTLDISNTVR 121
           YCK TLDISNT R
Sbjct: 119 YCKSTLDISNTAR 131