Miyakogusa Predicted Gene

Lj5g3v0612080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0612080.1 Non Characterized Hit- tr|F1S0W9|F1S0W9_PIG
Uncharacterized protein OS=Sus scrofa GN=NUP214 PE=4
SV=,26.63,4e-16,Nucleoporin domain,NULL; coiled-coil,NULL; seg,NULL;
SUBFAMILY NOT NAMED,NULL; NUCLEAR PORE COMPLEX ,CUFF.53369.1
         (1728 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069005.1 | hypothetical protein | HC | chr1:29579048-2956...   934   0.0  

>Medtr1g069005.1 | hypothetical protein | HC | chr1:29579048-29563417
            | 20130731
          Length = 1831

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/966 (57%), Positives = 627/966 (64%), Gaps = 40/966 (4%)

Query: 612  ATNVLDSTGREPFNVRDVSGVSPAINSTSRLXXXXXXXXXXXXXNIQPV-VGGNSPXXXX 670
            A  +  S G +PF V+DVS  SP I+                    +PV  GG       
Sbjct: 724  AATIPGSLGGKPFLVKDVSVESPGIS--------------------RPVQSGGQLTSIGA 763

Query: 671  XXXXXXXXXXXXXXXXXXQKF-PPNEQRVTSFKLPASSSDFSKQFGNINEMTKELDLLLK 729
                              +KF P NEQ V S K   SSSD SKQFGNINEMTKELDLLLK
Sbjct: 764  ESSHLSLPGNSTAGKSSIRKFHPSNEQHVNSSKPGISSSDLSKQFGNINEMTKELDLLLK 823

Query: 730  SIEETGGFRDACTRSLHSSVGEVEQSMDTISKQCKIWTCQVDEHLEQVHYLLNKTIQVVA 789
            SIEE GGFRDACTRSL SS+ EVEQSMDT+SKQCKI  CQVD+HLE+VHYLLNKT+QVVA
Sbjct: 824  SIEEPGGFRDACTRSLQSSIEEVEQSMDTLSKQCKIRMCQVDQHLEEVHYLLNKTVQVVA 883

Query: 790  RKIYIESIYKQASDSRYWDLWNRQKLNSELELKRQHILSLNQDLTYQLIELERHFNALEL 849
            RK+Y+E IYKQA DSRYWDLWNRQKLNSELELKRQHILSLNQDLT+QL+ELERHFNALEL
Sbjct: 884  RKVYLEDIYKQACDSRYWDLWNRQKLNSELELKRQHILSLNQDLTHQLVELERHFNALEL 943

Query: 850  NKFSQYGGHRKSLGAFQNRHGPSRSIQSLHSLHSAIGSQLVAAENLSECLSKQIAALSLR 909
            NKFSQYGGH    GA QNRHGPSR IQSLH+L +AI SQLVAAENLSECLSKQ+A LSLR
Sbjct: 944  NKFSQYGGHHIGRGASQNRHGPSRHIQSLHTLQNAIRSQLVAAENLSECLSKQMATLSLR 1003

Query: 910  SASEDQKNVKELFETIGIPYDASFGSPDIKGFMKTPPSKKLLFPDLTI-NKNQSMRVQAS 968
            S SE+QKNVKELFETIGIPYDASF SPD K FMKTP SKKLLF DLT  NK++S R+QAS
Sbjct: 1004 SPSEEQKNVKELFETIGIPYDASFRSPDTKAFMKTPSSKKLLFSDLTSNNKDKSKRIQAS 1063

Query: 969  AMKSCEPETSXXXXDSLDQSLTCFEPPKTIIKRMLLQDLQKPKSNESFISMNKEKVKISM 1028
            AMKSCEPET+    DSLDQS TC EPPKTIIKRMLLQDLQKPK  ES  S +KEK+K  M
Sbjct: 1064 AMKSCEPETARRRRDSLDQSWTCSEPPKTIIKRMLLQDLQKPKWKES--SFSKEKIKTFM 1121

Query: 1029 LEESAPRQGDARIPSSVFPASKMKASILDSHLQFEEVSEHSKVQPKADNLQAPTQVSDSK 1088
              E APRQ DARIPS V PA++ KAS LDS L  + VSEHSK      NL+A TQVSDSK
Sbjct: 1122 PVEFAPRQMDARIPSGVLPATETKASFLDSRLALKGVSEHSKTFTPDGNLKAHTQVSDSK 1181

Query: 1089 SRVLQRSNISAVPSQPAFQLSTAMMHGHGTETKDLAAEKSNVFQKFDLTSKTESKSILNT 1148
            S VLQRS ISAVP +P      A+MHG  TET+DLAAEK NV QK D +S +ESK    T
Sbjct: 1182 SHVLQRSKISAVPPRP------AVMHGPSTETRDLAAEKLNV-QKLDSSSNSESKPSSLT 1234

Query: 1149 KLPQKXXXXXXXXXXXPLSMFKSSEFMPNTNSKMTMASSSTMGDKLSGAFNPESRRKDVP 1208
            ++P+K           P S+FKSSE MP TN+K+T A+S  MGDKLSGAF PES +K++P
Sbjct: 1235 EMPKKFSFSTRSTTETPSSLFKSSE-MPITNNKVTTATSFMMGDKLSGAFTPESWKKNIP 1293

Query: 1209 SLESQSFTVSAASTLFGKGNDFDADKNRLKENSPAVPSFGSSREXXXXXXXXXXXXXXXX 1268
            S ES S ++SAAST+ GK  +F+ DK+  ++N PAV + G SRE                
Sbjct: 1294 SSESHSSSISAASTMVGKVTEFNFDKSWPEKNIPAVLNSG-SREPPLSSTNKTPSVSSVS 1352

Query: 1269 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHIISTSSASDFHYLSNQDPKXXXXXXXXX 1328
                                          NH  STSSASD  +LSNQ PK         
Sbjct: 1353 SSVSSIAVPPATVSVTLSNTATSSNISIDSNH-TSTSSASDSLHLSNQVPKQTLSLLPNP 1411

Query: 1329 XXXXXXXTSAKSDTQPAGVSNLKTD-DAASEAVSHLNEPLNSESELKLGSSRTFNPTTEQ 1387
                    S KS+ Q A V NLKT+ DAA+EAV+ L E LN ESE+KLGSSR  + T EQ
Sbjct: 1412 PCLNSTLESPKSEIQAAVVPNLKTNSDAAAEAVTQLKETLNGESEMKLGSSRNISLTNEQ 1471

Query: 1388 PSNNITSSELKVVSVSQSEQPSGAPVQLSTSFIXXXXXXXXKNEGFDVGIXXXXXXXXXX 1447
            P+N  T+S+   VSVSQSE+PS AP+QLSTSF+        KNEG DVGI          
Sbjct: 1472 PANKATNSDTNTVSVSQSERPSDAPLQLSTSFLTSTSVSNGKNEGLDVGISQEDEMEEEA 1531

Query: 1448 XXXXXXXXXXXXXXXXXXXXXXPNQSFSKSNPFGVSFNNA----SSSAITFSVPSGELFR 1503
                                  PN S  KSNPFG SF+N     SSS    SVP+G LFR
Sbjct: 1532 PETSNSPELSLGSLGGFGLGSTPNPSIPKSNPFGGSFSNVATSLSSSTNALSVPNGALFR 1591

Query: 1504 XXXXXXXXXXXXXXXXXTNSGAFSGSFNTGAAVPTQAPSAFGQPAQIGSGQQVLGSVLGT 1563
                             TNSGAFSG F  GAAVP QAP+AFGQPAQ+GSGQQVLGSVLGT
Sbjct: 1592 PPSFTFPSTPSPTSTQSTNSGAFSGGFGVGAAVPPQAPNAFGQPAQVGSGQQVLGSVLGT 1651

Query: 1564 FGQSRQ 1569
            FGQSRQ
Sbjct: 1652 FGQSRQ 1657



 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/655 (60%), Positives = 466/655 (71%), Gaps = 25/655 (3%)

Query: 1   MSTVKIEELEGEGFPTSDYFFKSIGDPVPLKSNDYSFDPETLPSHPLALSERFRLTFVAH 60
           MS VKIEELEG+  PT+D+FF  IG+PVPL SND +FD +T PS PL LS+RFRLTFVAH
Sbjct: 1   MSAVKIEELEGDIIPTTDHFFVKIGEPVPLNSNDSNFDLQTPPSQPLTLSQRFRLTFVAH 60

Query: 61  SSGFFVAKTKDLIDSAKEFKDKGSGSPVQQLSLVDVSIGRVRILALSTDNLTLAASVSGD 120
           S GF+V KTKDLIDS        SGS V++L LVDV+IGRVRILA+S+DNLTLAA  +GD
Sbjct: 61  SQGFYVVKTKDLIDSGNR-----SGSSVEKLCLVDVAIGRVRILAISSDNLTLAACAAGD 115

Query: 121 IRFYSVRDFVNKEVKQSFSCSLNNSTFVKDMRWITTSENSYVVLSNTGALYHGEPGFPLK 180
           IRFY V+ F+NKEVKQSFSCSL+NSTFVKDMRW T SENSY VLSNTG LYHG  GFPLK
Sbjct: 116 IRFYDVQSFLNKEVKQSFSCSLDNSTFVKDMRWTTASENSYAVLSNTGQLYHGRAGFPLK 175

Query: 181 LVMENVDAVDWGVKGRFVVVARKNALSILSTKFEERVSISLPFESWISDYADNVSIKVDS 240
            VM++V+AVDW +KG  V VAR+N LSILST FEE+VSISLPF SWI D  +NVS+KVDS
Sbjct: 176 HVMDSVEAVDWCIKGTSVAVARRNVLSILSTNFEEKVSISLPFRSWIGDSEENVSVKVDS 235

Query: 241 IKCVRPDSIIIGCFQLTEDGKEENYLIQVIRSRLGEIADGCSELVVRSFYEIYPCLTDDI 300
           +KCVRPD+IIIGCFQ TEDG+EENYLIQVI S+ GEI+D CSELVV+SFY+ YP + DDI
Sbjct: 236 VKCVRPDAIIIGCFQFTEDGQEENYLIQVISSKHGEISDDCSELVVQSFYDNYPAMIDDI 295

Query: 301 VPIGTGPYLLLTYLEQCQLAINANVKNTDDHIVLLGWSIDGDKSEAAVG---YITEDKYI 357
           V  G+GPYLLL YLEQCQL INAN+KNTD+HI LLGW+ D DKSEA V     I   K+I
Sbjct: 296 VSPGSGPYLLLAYLEQCQLVINANMKNTDNHISLLGWTQDDDKSEAEVVDRLEIDRSKWI 355

Query: 358 PRIXXXXXXXXXXXXXXCIDNVSIYDKVEIQLGG-EERNELSPYCVLLCLTLEGKLVMFH 416
           P+I              CID VSIY KV +Q+   EE  ELSPYCVL+CLTL+GKLV+FH
Sbjct: 356 PKIELQENEDDNLLLGLCIDKVSIYQKVRVQIAAEEEETELSPYCVLMCLTLDGKLVLFH 415

Query: 417 VASLAGSKVSPEFDSTVHDEEDAFVRPPVDESST-SHGLQKKTQELDKAVEVIENLKSKP 475
           VASLAGSKVSPE D   HDE+DA V+ PVDE+ST SHGLQKK +ELD+ VEV E  +   
Sbjct: 416 VASLAGSKVSPEVDYAEHDEKDASVKLPVDENSTFSHGLQKKERELDQDVEVREENRKPK 475

Query: 476 HANPNQITQTEDYSKYLEVESVKNVQSLNSDNQNPCPPGE-QQKNVGQKTAALGTSTGSF 534
           H         EDY+KY EV S  NVQS+ SD     P  + +Q N  QKTA +GTS  SF
Sbjct: 476 HF-------AEDYTKYREVGSATNVQSVKSDVLQMVPGADVKQVNGSQKTAVIGTSYSSF 528

Query: 535 IASRNSAAHGLPSYN-LQETTEMTTGLWNKNSSQGSHRVSHPLPGETFSFPKXXXXXXXX 593
             + NSAA GL S    Q+ TE T  L N NSS+ S R S+ LPGETFSFPK        
Sbjct: 529 PVNFNSAAPGLSSNKYFQDDTERTKELPNTNSSRDSQRASYQLPGETFSFPKSSNVTSVS 588

Query: 594 XXXXXXXXXYQSKKYPMGAT--NVLDSTGR----EPFNVRDVSGVSPAINSTSRL 642
                    YQ+K Y +GAT  N  +  G+    +P  V+D +  SP + S + +
Sbjct: 589 GSSYVDGSGYQNKNYTVGATNANAANVPGKGYCGKPLFVKDANVESPVLYSAATI 643