Miyakogusa Predicted Gene

Lj5g3v0575460.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0575460.4 Non Characterized Hit- tr|D8TNC6|D8TNC6_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,48.94,0.0000000000003, ,CUFF.53338.4
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g009980.1 | plastid lipid-associated protein | HC | chr1:1...   169   5e-43

>Medtr1g009980.1 | plastid lipid-associated protein | HC |
           chr1:1660245-1664679 | 20130731
          Length = 234

 Score =  169 bits (428), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 87/91 (95%)

Query: 1   MIQVVEAPDIVRNKISFSAFGFLDGEVSLNGKLKALDTEWIQVVFEAPELKLGSWEVQYG 60
           M+QVVEAPD+VRNKI+F+A GFLDGEVSL G LKALDTEWIQVVFEAPELKLGSW+ QYG
Sbjct: 143 MVQVVEAPDVVRNKIAFTALGFLDGEVSLKGTLKALDTEWIQVVFEAPELKLGSWKGQYG 202

Query: 61  GQSEVKLRITYVDEKIRLGLGSRGSLFVFQR 91
           GQSEVKLRITYVDEKIRLGLGSRGSLFVF+R
Sbjct: 203 GQSEVKLRITYVDEKIRLGLGSRGSLFVFRR 233