Miyakogusa Predicted Gene
- Lj5g3v0554400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0554400.1 tr|B9H7G8|B9H7G8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_559256 PE=4
SV=1,63.64,7e-18,DUF1997,Protein of unknown function
DUF1997,CUFF.53391.1
(118 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g010080.1 | DUF1997 family protein | HC | chr1:1729191-173... 183 3e-47
Medtr1g010080.2 | DUF1997 family protein | HC | chr1:1729190-173... 147 2e-36
Medtr1g010080.3 | DUF1997 family protein | HC | chr1:1729230-173... 147 2e-36
Medtr1g010080.4 | DUF1997 family protein | HC | chr1:1729190-173... 147 2e-36
>Medtr1g010080.1 | DUF1997 family protein | HC |
chr1:1729191-1732903 | 20130731
Length = 261
Score = 183 bits (465), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 102/124 (82%), Gaps = 7/124 (5%)
Query: 1 MAKAILLSNKWYSHGQR---SSTLQKFSHGKKIDIK--AVTSSDSNSKKANLFAAKKDRV 55
MAKAILL NKWY HGQ+ + + Q F+H KK+DIK AVTSSDSN+KKANLFAAKK+RV
Sbjct: 1 MAKAILLCNKWYGHGQQFWATHSFQNFTHCKKMDIKVKAVTSSDSNAKKANLFAAKKERV 60
Query: 56 KLPTYDD--VLGGKRYPISEFLSQPSAIASVLNTKALQSFQSLGANTYRCELPKLRFFNF 113
KLPTYDD VLGGK Y ISEFLSQPS IA+VLNTK LQSFQSL ANTYRCELPKL+ F
Sbjct: 61 KLPTYDDDDVLGGKEYHISEFLSQPSGIAAVLNTKVLQSFQSLDANTYRCELPKLKLLKF 120
Query: 114 EASP 117
E SP
Sbjct: 121 EVSP 124
>Medtr1g010080.2 | DUF1997 family protein | HC |
chr1:1729190-1733113 | 20130731
Length = 229
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 78/90 (86%), Gaps = 2/90 (2%)
Query: 30 IDIKAVTSSDSNSKKANLFAAKKDRVKLPTYDD--VLGGKRYPISEFLSQPSAIASVLNT 87
I +KAVTSSDSN+KKANLFAAKK+RVKLPTYDD VLGGK Y ISEFLSQPS IA+VLNT
Sbjct: 3 IKVKAVTSSDSNAKKANLFAAKKERVKLPTYDDDDVLGGKEYHISEFLSQPSGIAAVLNT 62
Query: 88 KALQSFQSLGANTYRCELPKLRFFNFEASP 117
K LQSFQSL ANTYRCELPKL+ FE SP
Sbjct: 63 KVLQSFQSLDANTYRCELPKLKLLKFEVSP 92
>Medtr1g010080.3 | DUF1997 family protein | HC |
chr1:1729230-1732869 | 20130731
Length = 229
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 78/90 (86%), Gaps = 2/90 (2%)
Query: 30 IDIKAVTSSDSNSKKANLFAAKKDRVKLPTYDD--VLGGKRYPISEFLSQPSAIASVLNT 87
I +KAVTSSDSN+KKANLFAAKK+RVKLPTYDD VLGGK Y ISEFLSQPS IA+VLNT
Sbjct: 3 IKVKAVTSSDSNAKKANLFAAKKERVKLPTYDDDDVLGGKEYHISEFLSQPSGIAAVLNT 62
Query: 88 KALQSFQSLGANTYRCELPKLRFFNFEASP 117
K LQSFQSL ANTYRCELPKL+ FE SP
Sbjct: 63 KVLQSFQSLDANTYRCELPKLKLLKFEVSP 92
>Medtr1g010080.4 | DUF1997 family protein | HC |
chr1:1729190-1733113 | 20130731
Length = 229
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 78/90 (86%), Gaps = 2/90 (2%)
Query: 30 IDIKAVTSSDSNSKKANLFAAKKDRVKLPTYDD--VLGGKRYPISEFLSQPSAIASVLNT 87
I +KAVTSSDSN+KKANLFAAKK+RVKLPTYDD VLGGK Y ISEFLSQPS IA+VLNT
Sbjct: 3 IKVKAVTSSDSNAKKANLFAAKKERVKLPTYDDDDVLGGKEYHISEFLSQPSGIAAVLNT 62
Query: 88 KALQSFQSLGANTYRCELPKLRFFNFEASP 117
K LQSFQSL ANTYRCELPKL+ FE SP
Sbjct: 63 KVLQSFQSLDANTYRCELPKLKLLKFEVSP 92