Miyakogusa Predicted Gene

Lj5g3v0553260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0553260.1 CUFF.53330.1
         (1506 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...  1809   0.0  

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein | HC
            | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score = 1809 bits (4686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 948/1443 (65%), Positives = 1060/1443 (73%), Gaps = 35/1443 (2%)

Query: 2    VSDSEKIVATSTSEAYVFDRDDNDDCFKECYIGGKDISALVRKXXXXXXXXXXXXXXXXX 61
            V DS+K + +S SEA + +R+DNDDCF+EC IG KDIS LVRK                 
Sbjct: 400  VPDSKKTLTSSISEALISEREDNDDCFQECRIGSKDISDLVRKAVQAAEAEARSANAPEE 459

Query: 62   XXXXXXXXXXXLVKTAASEEFKSTNNEEXXXXXXXXXXWTVTDAAXXXXXXXXXXXXNKE 121
                       LVKTAASEE+KSTN+EE           TV DAA            N E
Sbjct: 460  AVKAAGDAAADLVKTAASEEYKSTNDEEASVLAASRAASTVIDAASAVEVSRRSVCINTE 519

Query: 122  TENAGVQDTESCEDVEDYCIPDTQSLLQLREKYCIQCXXXXXXXXXXXXXXXHEKGVDVC 181
            TEN   ++TES EDVEDY +PDT++L QLREKYCIQC               HEKGVDVC
Sbjct: 520  TENVTSRETESIEDVEDYFLPDTRTLTQLREKYCIQCLALLGEYVEVLGPVLHEKGVDVC 579

Query: 182  LALLQQNSKHQEPSEVALLLPDVMKMICALAAHRKFAALFVDRGGMGKLLGVPRMAQTFF 241
            L LLQQNSKH EPS+VA +LPDVMK+ICALAAHRKFAALFVDRGGM KLL VPR AQTFF
Sbjct: 580  LGLLQQNSKHHEPSKVAFVLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRTAQTFF 639

Query: 242  GLSSCLFAIGSVQGIMERVCALSSDVIYRLVELALQLLECNQEQARKNXXXXXXXXXXXX 301
            GLSSCLF IGS+QGIMERVCAL SDVIY +VELALQL+ECNQ+ ARKN            
Sbjct: 640  GLSSCLFTIGSLQGIMERVCALPSDVIYHVVELALQLIECNQDLARKNAALFFAAAFVFR 699

Query: 302  XXXXXXXXQDGLQKLLGLLNDAAMLRXXXXXXXXXXXXXXXXXXDRSS--EVLTSFEKQI 359
                    QDGLQKLLGLLNDAA +R                  DR+S  EVLTS EKQ+
Sbjct: 700  AVLDAFDSQDGLQKLLGLLNDAASIRSGVTSGALGSSNSGSLRNDRTSSAEVLTSSEKQV 759

Query: 360  AYHTCVALRQYFRAHLLLLVDSIRPNKSNRSASRNIPSVRAAHRPLDISDEAMDAVFLQL 419
            AYHTCVALRQYFRAHLL+L+DSIRPNKSNRS++RNIPS RAA++PLDIS+EAMDAVFLQL
Sbjct: 760  AYHTCVALRQYFRAHLLVLIDSIRPNKSNRSSARNIPSTRAAYKPLDISNEAMDAVFLQL 819

Query: 420  QKDRKLGSSFVRTRWPAVDKFLACNGHVTMLELCQGPPPPVERYLHDLLQYALDVLHIVT 479
            QKDRKLG +FVRT W  V+KFLA NGH+TMLELCQ PP  VERYLHDLLQYAL VL IVT
Sbjct: 820  QKDRKLGPAFVRTGWREVEKFLASNGHITMLELCQAPP--VERYLHDLLQYALGVLQIVT 877

Query: 480  LVPSSRKMIVTATLSNNRVGTAVILDAANIVSNHDDPEIIRPALNVLVNLVCPPPSISNK 539
            LVPSSRKMIV ATLS NR G +VILDAANI S+H DPEII+PALNVLVNLVCPPPSISNK
Sbjct: 878  LVPSSRKMIVNATLSTNRAGISVILDAANIASSHVDPEIIQPALNVLVNLVCPPPSISNK 937

Query: 540  PASVTPGQQSASAQTSKGPMSETRDRTAERNVSDRPVNFSSQTDTREQNAESNAVDRDGA 599
            P +V+ GQQ  S+Q S G + ETRDR AERN+          TD RE+N ES+AVDR  A
Sbjct: 938  PPAVSQGQQFPSSQASNGAL-ETRDRNAERNI----------TDPRERNGESSAVDRGTA 986

Query: 600  AAVNTQTV--------LAATSGLVGDHRISXXXXXXXXXXXXXXXXXYRQAREAVRANNG 651
            AA+ TQ+V         +A+SGLVGD RIS                 Y QAREAVR NNG
Sbjct: 987  AALTTQSVNTTPQTPVPSASSGLVGDRRISLGAGARCAGLATQLEQGYHQAREAVRNNNG 1046

Query: 652  IKVLLHLLQQRIYSPPXXXXXXXXXXXXXXXXXXXDDIIAHILTKLQVGKKLSELIRDSG 711
            IKVLLHLLQ RIYSPP                   DD IAHILTKLQVGK+LSELIRDSG
Sbjct: 1047 IKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKRLSELIRDSG 1106

Query: 712  SQTHGTEQGRWQAELSQAAIELIGVVTNSGHXXXXXXXXXXXXXXXXIEREAIAPATPIS 771
            S T GTEQGRWQAELSQAAIELIG+V N G                 IER AIA ATPI+
Sbjct: 1107 STTLGTEQGRWQAELSQAAIELIGIVANLGRASTLVASDAATPALRRIERAAIAAATPIT 1166

Query: 772  YDSRELLQLIHEYVRASGLSQTASILLKEAQLKPLPSLIAPSSLAQPPSTQEAPSVQLQW 831
            Y SRELL LIHE+++ASGL QTAS+LLKEAQL  LPSL+APSSLAQ P+TQE  S Q+QW
Sbjct: 1167 YPSRELLLLIHEHLQASGLGQTASLLLKEAQLTSLPSLLAPSSLAQQPTTQEVSSTQIQW 1226

Query: 832  PSGRAP-GFLSDKLKLNAGDDDV-LGSDVSTRIGSAFTXXXXXXXXXXXXXXXXRHQLDD 889
            PSGR P GFL+ KLK N+ ++D  L SD  +    + T                RHQ+ D
Sbjct: 1227 PSGRTPSGFLTSKLKYNSKNEDACLKSDAGSARKKSLTFSSSFGSHT-------RHQVID 1279

Query: 890  SRQSSVRKVSSTSKGSSETAIVSETPSKLLEKHNIDSESQYKTPIILPMKRKLSDLKDTR 949
            SR SS RK     K SSET+ V E PS+   KHN ++ SQ+KTPI LP KRKLSDLKD  
Sbjct: 1280 SRHSSTRKWLRAGKESSETSTV-ENPSESSVKHNTETGSQFKTPITLPTKRKLSDLKDIP 1338

Query: 950  VLSSSRKRLIAGDHGIRSPICITPNTVRKTNLQTDAIRFPTPSSNLRNQQGRCSVDYVDE 1009
            + SSS KRL  GD G+RSPIC   ++VRK++L TDA+   TP+ NLR+QQGRC+ DYVD+
Sbjct: 1339 MFSSSAKRLNVGDQGLRSPIC--SSSVRKSSLHTDAVGLFTPTGNLRSQQGRCTADYVDD 1396

Query: 1010 NQNSMSNLGQFTPSSAAINDLQHSNSERMTLDSIVVQYLKHQHLQCPAXXXXXXXXXXXX 1069
            NQ  +SNLGQ TPSS  +NDLQ +N ER+TLDS+VVQYLKHQH QCPA            
Sbjct: 1397 NQYCISNLGQMTPSSQVVNDLQLNNPERVTLDSLVVQYLKHQHRQCPAPITTLPPISLLH 1456

Query: 1070 XXVCPEPKRSLDAASNVTARFKRREFKFIYGGVHGNRKDRQFVYSRFRPWRTCRDDAGAL 1129
              VCPEPKRSLDA SNVTAR   REFKF+YGGVHGNRKDRQFV+SRFRPWRT RDDAGAL
Sbjct: 1457 PHVCPEPKRSLDAPSNVTARLGTREFKFMYGGVHGNRKDRQFVFSRFRPWRTYRDDAGAL 1516

Query: 1130 LTCITFLGDSSRIAVGSHNGEVKLFDSNNNNVVESFTGHQYPLTLVQSFVSGETQLLLSS 1189
            LTCITF+GDSS IAVGSH GE+K FDSNNNNVVESFTGH  PLTLVQSFVSGETQLLLSS
Sbjct: 1517 LTCITFVGDSSHIAVGSHTGELKFFDSNNNNVVESFTGHDAPLTLVQSFVSGETQLLLSS 1576

Query: 1190 SSQDVRLWDASSLSSGTTHSFDGCKAARFSNSGNVFAALSSESAQREILLYDIQTCQLES 1249
            SS+DV++WDA+S+ +G T SF+GCKAARFSNSG  FAALSSES  REILLYDIQ  +LE+
Sbjct: 1577 SSKDVKMWDATSILAGPTRSFEGCKAARFSNSGKTFAALSSESTAREILLYDIQEGKLEA 1636

Query: 1250 KLSDTSTNFTGRGHVYPLIHFNPSDSMLLWNGVLWDQRVSEPVHRFDQFTDYGGGGFHPA 1309
             LSDT T  TGRGH Y  IHF+P+DSMLLWNGVLWD RVS PVHRFDQFTDYGGGGFHPA
Sbjct: 1637 TLSDTFTTSTGRGHAYSSIHFSPADSMLLWNGVLWDPRVSTPVHRFDQFTDYGGGGFHPA 1696

Query: 1310 GNEVIINSEVWDLRKFSLLRSVPSLDQTEITFNAHGDVLYAILRRKIEDVMSAVNTRRVK 1369
            GNEVIINSEVWDLRKF LLRSV SLDQT ITFNA GDV+YAILRR +EDVMSA++ RRVK
Sbjct: 1697 GNEVIINSEVWDLRKFRLLRSVASLDQTAITFNARGDVMYAILRRNLEDVMSAMHARRVK 1756

Query: 1370 HPLFAAFRTVDAVNYSEIATIPVDRCVLDFATEPTDSIVGLVTMDDQDEMFASARIYEIG 1429
            HPLF+AFRTVDA+NYS+IATIPVDRCVLDFATEPTDS VGL+TMDDQ +M++SAR YEIG
Sbjct: 1757 HPLFSAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQGDMYSSARSYEIG 1816

Query: 1430 RRR 1432
            RRR
Sbjct: 1817 RRR 1819