Miyakogusa Predicted Gene

Lj5g3v0539630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0539630.1 tr|B9HAJ6|B9HAJ6_POPTR Ein3-binding f-box protein
4 OS=Populus trichocarpa GN=EBF4 PE=4 SV=1,51.81,3e-17,SUBFAMILY NOT
NAMED,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL,NODE_34412_length_216_cov_656.555542.path1.1
         (84 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g012520.1 | EIN3-binding F-box-like protein | HC | chr1:25...   134   2e-32
Medtr3g107280.1 | EIN3-binding F-box-like protein | HC | chr3:49...   112   6e-26
Medtr4g114640.1 | EIN3-binding F-box-like protein | HC | chr4:47...    62   8e-11
Medtr4g114650.3 | EIN3-binding F-box-like protein | HC | chr4:47...    56   6e-09
Medtr4g114650.4 | EIN3-binding F-box-like protein | HC | chr4:47...    56   6e-09
Medtr4g114650.2 | EIN3-binding F-box-like protein | HC | chr4:47...    54   3e-08
Medtr4g114650.1 | EIN3-binding F-box-like protein | HC | chr4:47...    54   3e-08

>Medtr1g012520.1 | EIN3-binding F-box-like protein | HC |
          chr1:2502649-2506197 | 20130731
          Length = 643

 Score =  134 bits (337), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/83 (73%), Positives = 71/83 (85%), Gaps = 2/83 (2%)

Query: 1  MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLE 60
          MS+V GFSG D+FC GG +YTNPKEA+FFLS G  VDVY+P +KRSR+S PFVF  EW E
Sbjct: 1  MSQVFGFSG-DNFCHGG-LYTNPKEANFFLSLGPQVDVYYPPQKRSRVSVPFVFDGEWFE 58

Query: 61 QKQETSIETLPDECLFEIFRKLP 83
          QKQ+TSIE+LPDECLFEIFR+LP
Sbjct: 59 QKQKTSIESLPDECLFEIFRRLP 81


>Medtr3g107280.1 | EIN3-binding F-box-like protein | HC |
          chr3:49486587-49482963 | 20130731
          Length = 641

 Score =  112 bits (281), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1  MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSRE-WL 59
          MSKVL F+G DDFC G ++Y NPKEAS FLS G     Y P +KRSR + PF FS E W 
Sbjct: 1  MSKVLSFTGGDDFCTGRSMYLNPKEASLFLSLGRQEYAYRPLQKRSRFNVPFDFSGEKWF 60

Query: 60 EQKQETSIETLPDECLFEIFRKLP 83
          + K ETSIETLPDECLFEI R+LP
Sbjct: 61 DLKPETSIETLPDECLFEILRRLP 84


>Medtr4g114640.1 | EIN3-binding F-box-like protein | HC |
          chr4:47161796-47165070 | 20130731
          Length = 633

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 14/80 (17%)

Query: 8  SGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSR--EWLEQKQE- 64
          SG D+  PG   YT              VDV+    KR+RISAPF F      LE  Q+ 
Sbjct: 8  SGNDELHPGCRGYTISSN----------VDVHCSPTKRTRISAPFTFGPLPRALEHGQDL 57

Query: 65 -TSIETLPDECLFEIFRKLP 83
            SIE+LPDECLFEIFR+LP
Sbjct: 58 KPSIESLPDECLFEIFRRLP 77


>Medtr4g114650.3 | EIN3-binding F-box-like protein | HC |
          chr4:47171720-47177446 | 20130731
          Length = 684

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 5  LGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLEQKQE 64
          + F G  +  PGG++ T  +  +         DV+    KR RIS PF F     EQ  +
Sbjct: 1  MDFPGDVELYPGGSMDTGGRVYAIG-------DVHCSPTKRPRISVPFSFGALEHEQDLK 53

Query: 65 TSIETLPDECLFEIFRKLP 83
           +IE L DECLFEIFR+LP
Sbjct: 54 PTIEVLLDECLFEIFRRLP 72


>Medtr4g114650.4 | EIN3-binding F-box-like protein | HC |
          chr4:47171720-47177446 | 20130731
          Length = 684

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 5  LGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLEQKQE 64
          + F G  +  PGG++ T  +  +         DV+    KR RIS PF F     EQ  +
Sbjct: 1  MDFPGDVELYPGGSMDTGGRVYAIG-------DVHCSPTKRPRISVPFSFGALEHEQDLK 53

Query: 65 TSIETLPDECLFEIFRKLP 83
           +IE L DECLFEIFR+LP
Sbjct: 54 PTIEVLLDECLFEIFRRLP 72


>Medtr4g114650.2 | EIN3-binding F-box-like protein | HC |
          chr4:47171720-47177446 | 20130731
          Length = 688

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 1  MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLE 60
          MS  +  S   +  PGG++ T  +  +         DV+    KR RIS PF F     E
Sbjct: 1  MSGRVNQSSDVELYPGGSMDTGGRVYAIG-------DVHCSPTKRPRISVPFSFGALEHE 53

Query: 61 QKQETSIETLPDECLFEIFRKLP 83
          Q  + +IE L DECLFEIFR+LP
Sbjct: 54 QDLKPTIEVLLDECLFEIFRRLP 76


>Medtr4g114650.1 | EIN3-binding F-box-like protein | HC |
           chr4:47171813-47177446 | 20130731
          Length = 739

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 1   MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLE 60
           MS  +  S   +  PGG++ T  +  +         DV+    KR RIS PF F     E
Sbjct: 52  MSGRVNQSSDVELYPGGSMDTGGRVYAIG-------DVHCSPTKRPRISVPFSFGALEHE 104

Query: 61  QKQETSIETLPDECLFEIFRKLP 83
           Q  + +IE L DECLFEIFR+LP
Sbjct: 105 QDLKPTIEVLLDECLFEIFRRLP 127