Miyakogusa Predicted Gene

Lj5g3v0529130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0529130.1 CUFF.53213.1
         (296 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g012830.1 | AmmeMemoRadiSam system protein B | HC | chr1:2...   530   e-151
Medtr1g012830.2 | AmmeMemoRadiSam system protein B | HC | chr1:2...   440   e-124

>Medtr1g012830.1 | AmmeMemoRadiSam system protein B | HC |
           chr1:2671074-2667014 | 20130731
          Length = 296

 Score =  530 bits (1366), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/296 (88%), Positives = 272/296 (91%)

Query: 1   MGSKVRKPSHAGSWYTDNPKQLSEELEGWLKSCGLTKSPDVRGVIAPHXXXXXXXXXXXX 60
           M +KVRKPSHAGSWYTDNPKQLSEELEGWL SCGLTKS DVRGVIAPH            
Sbjct: 1   MVTKVRKPSHAGSWYTDNPKQLSEELEGWLNSCGLTKSSDVRGVIAPHAGYSYSGRAAAY 60

Query: 61  XFGNIDPSNITRVFLLGPSHHYYTAKCALSTATVYKTPIGDLQIDLEVNEQLKATGKFEM 120
            FGNIDPSNI RVFLLGPSHHYYT KCALSTATVYKTPIGDL IDLEVNEQLKATGKFE 
Sbjct: 61  AFGNIDPSNIKRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPIDLEVNEQLKATGKFET 120

Query: 121 MDIRVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYGEILAKYVDDPTNF 180
           MDIRVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYG+ILA++VDDPTNF
Sbjct: 121 MDIRVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYGQILAQFVDDPTNF 180

Query: 181 FSISSDFCHWGARFNYQHYDKKHGPIYKSIEALDKMGMDIIEIGDPDSFKRYLSEYDNTI 240
           FSISSDFCHWG+RFNY HYDKKHGPIYKSIEALDKMGMDIIE GDPDSFK+YLSE+DNTI
Sbjct: 181 FSISSDFCHWGSRFNYMHYDKKHGPIYKSIEALDKMGMDIIETGDPDSFKKYLSEFDNTI 240

Query: 241 CGRHPISVFLHMLRNCSTKIKIKFLRYEQSSQCQSTRDSSVSYASAAAKIDNSSSS 296
           CGRHPISVFLHML NCS+KIK+KFLRYEQSSQC STRDSSVSYASAAAK+D+SSSS
Sbjct: 241 CGRHPISVFLHMLMNCSSKIKVKFLRYEQSSQCHSTRDSSVSYASAAAKVDDSSSS 296


>Medtr1g012830.2 | AmmeMemoRadiSam system protein B | HC |
           chr1:2671019-2667014 | 20130731
          Length = 270

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/235 (92%), Positives = 227/235 (96%)

Query: 62  FGNIDPSNITRVFLLGPSHHYYTAKCALSTATVYKTPIGDLQIDLEVNEQLKATGKFEMM 121
           FGNIDPSNI RVFLLGPSHHYYT KCALSTATVYKTPIGDL IDLEVNEQLKATGKFE M
Sbjct: 36  FGNIDPSNIKRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPIDLEVNEQLKATGKFETM 95

Query: 122 DIRVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYGEILAKYVDDPTNFF 181
           DIRVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYG+ILA++VDDPTNFF
Sbjct: 96  DIRVDEAEHSMEMHLPYLAKVFEGHPVKIVPILVGAVSAENEAMYGQILAQFVDDPTNFF 155

Query: 182 SISSDFCHWGARFNYQHYDKKHGPIYKSIEALDKMGMDIIEIGDPDSFKRYLSEYDNTIC 241
           SISSDFCHWG+RFNY HYDKKHGPIYKSIEALDKMGMDIIE GDPDSFK+YLSE+DNTIC
Sbjct: 156 SISSDFCHWGSRFNYMHYDKKHGPIYKSIEALDKMGMDIIETGDPDSFKKYLSEFDNTIC 215

Query: 242 GRHPISVFLHMLRNCSTKIKIKFLRYEQSSQCQSTRDSSVSYASAAAKIDNSSSS 296
           GRHPISVFLHML NCS+KIK+KFLRYEQSSQC STRDSSVSYASAAAK+D+SSSS
Sbjct: 216 GRHPISVFLHMLMNCSSKIKVKFLRYEQSSQCHSTRDSSVSYASAAAKVDDSSSS 270