Miyakogusa Predicted Gene

Lj5g3v0523180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0523180.1 tr|B9MY55|B9MY55_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594536 PE=4
SV=1,50.93,0.000000000000009,PRA1,Prenylated rab acceptor
PRA1,gene.g59033.t1.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g081655.1 | PRA1 family protein | HC | chr7:31312648-31312...   167   2e-42
Medtr7g092700.1 | PRA1 family protein | HC | chr7:36770328-36771...   129   8e-31
Medtr7g092710.1 | PRA1 family protein | HC | chr7:36772643-36773...   119   6e-28

>Medtr7g081655.1 | PRA1 family protein | HC | chr7:31312648-31312052
           | 20130731
          Length = 198

 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 101/123 (82%), Gaps = 1/123 (0%)

Query: 1   MILIPRHKVSLILLVIMTYVTTLYCLVLRAYPNSVLLHRSVDKRFVFGLLVFATLVQLIL 60
           +ILIP HK SLILLVIMTYV T+Y L+LRA PN+V+LHR VDKRFV  +LVFAT+VQLIL
Sbjct: 77  IILIPHHKTSLILLVIMTYVITIYHLLLRACPNNVVLHRRVDKRFVLCVLVFATIVQLIL 136

Query: 61  TDAGVYLAVSLACVVPLVLLHAVLWVSHHTFVETEDEDACCCAKQLVPLDGHNECRTDGI 120
           TDAG+ LAV+LAC VPLVL+HAVLWVSH+ F E ED   CCC K+L PL GH+E   DG+
Sbjct: 137 TDAGIRLAVTLACAVPLVLVHAVLWVSHYVF-EVEDVSCCCCNKELAPLVGHSEFGGDGL 195

Query: 121 ENV 123
           ENV
Sbjct: 196 ENV 198


>Medtr7g092700.1 | PRA1 family protein | HC | chr7:36770328-36771788
           | 20130731
          Length = 200

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 2/122 (1%)

Query: 1   MILIPRHKVSLILLVIMTYVTTLYCLVLRAYPNSVLLHRSVDKRFVFGLLVFATLVQLIL 60
           + LIP  KVSLILLVIMTYVTTLYCL+LRA PNSV+LHR +DKR V  LL  AT +QLIL
Sbjct: 78  ITLIPERKVSLILLVIMTYVTTLYCLLLRACPNSVVLHRIIDKRIVLSLLFIATAIQLIL 137

Query: 61  TDAGVYLAVSLACVVPLVLLHAVLWVSHHTFVETEDEDACCCAKQLVPLDG-HNECRTDG 119
           T+AG++ AV+L C VP+VLLHAVLW   + +   E E+     ++L PL G  N+     
Sbjct: 138 TEAGIHFAVTLTCSVPVVLLHAVLWAGSYEYDAYETEEG-SGKEELAPLTGSQNDSEPHN 196

Query: 120 IE 121
           ++
Sbjct: 197 VD 198


>Medtr7g092710.1 | PRA1 family protein | HC | chr7:36772643-36773544
           | 20130731
          Length = 199

 Score =  119 bits (298), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 3   LIPRHKVSLILLVIMTYVTTLYCLVLRAYPNSVLLHRSVDKRFVFGLLVFATLVQLILTD 62
           LIP  KVSLILL+IMTYVTTLYCL+LR+ PNS LLHR +DK+ V   LV AT +QLI+TD
Sbjct: 78  LIPDQKVSLILLLIMTYVTTLYCLILRSCPNSHLLHRIIDKKIVLTFLVIATAIQLIMTD 137

Query: 63  AGVYLAVSLACVVPLVLLHAVLWVSHHTFVETEDEDACCCAKQLVPL 109
           AG + A++  C VP+VLLHAVLW S +   ET++       ++L PL
Sbjct: 138 AGTHFAITSTCSVPVVLLHAVLWDSSYDGYETKEGSG---TQELAPL 181