Miyakogusa Predicted Gene

Lj5g3v0510910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0510910.1 tr|O81977|O81977_SOYBN Rudimentary enhancer
(Fragment) OS=Glycine max PE=2 SV=1,87.1,0.0000007,ERH-like,NULL;
ER,Enhancer of
rudimentary,gene.Ljchr5_pseudomol_20120830.path1.gene1014.1
         (34 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g014230.1 | enhancer of rudimentary-like protein | HC | ch...    49   7e-07

>Medtr1g014230.1 | enhancer of rudimentary-like protein | HC |
          chr1:3061270-3058202 | 20130731
          Length = 104

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 30/35 (85%), Gaps = 1/35 (2%)

Query: 1  MAN-NRHTIILMQTSHNRATRTFMDYASITQAMEA 34
          MAN N HTIIL+QTSH+RATRTFMD+ SI+ A++ 
Sbjct: 1  MANRNHHTIILLQTSHHRATRTFMDFDSISLAIDG 35