Miyakogusa Predicted Gene

Lj5g3v0510890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0510890.1 Non Characterized Hit- tr|I3T9E4|I3T9E4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1; EXOSOME
COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA ,CUFF.53124.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC | chr1:...   271   3e-73
Medtr8g077430.1 | exosome complex exonuclease RRP41 | HC | chr8:...   265   2e-71
Medtr8g077430.2 | exosome complex exonuclease RRP41 | HC | chr8:...   265   2e-71
Medtr8g077430.3 | exosome complex exonuclease RRP41 | HC | chr8:...   265   2e-71
Medtr8g077430.4 | exosome complex exonuclease RRP41 | HC | chr8:...   141   3e-34
Medtr8g077430.5 | exosome complex exonuclease RRP41 | HC | chr8:...   141   3e-34
Medtr1g063090.1 | exosome complex exonuclease RRP41 | HC | chr1:...    89   2e-18
Medtr2g019210.2 | exosome complex exonuclease RRP41 | HC | chr2:...    86   2e-17
Medtr2g019210.3 | exosome complex exonuclease RRP41 | HC | chr2:...    86   2e-17
Medtr2g019210.1 | exosome complex exonuclease RRP41 | HC | chr2:...    86   2e-17
Medtr1g007060.2 | exosome complex exonuclease RRP46 | HC | chr1:...    65   4e-11
Medtr1g007060.1 | exosome complex exonuclease RRP46 | HC | chr1:...    65   4e-11

>Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC |
           chr1:11167445-11172254 | 20130731
          Length = 683

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/160 (82%), Positives = 144/160 (90%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE+HFIQGGIAQDLRCDGRKRLTYRPI+VETGVIPQA+GSAR+++GATEVIASV
Sbjct: 398 MVGLSLGEQHFIQGGIAQDLRCDGRKRLTYRPIHVETGVIPQANGSARVKIGATEVIASV 457

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
           KAELGKPS +QPDKGKV IYIDCSSTAEPAFEGRGG++LSAELS ALQR           
Sbjct: 458 KAELGKPSSMQPDKGKVFIYIDCSSTAEPAFEGRGGEELSAELSTALQRCLLGAKSGAGA 517

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK 160
            ID +SL+VVEGKICWDLYIDGLVVSSDGNLLDALG+AIK
Sbjct: 518 GIDRTSLVVVEGKICWDLYIDGLVVSSDGNLLDALGSAIK 557


>Medtr8g077430.1 | exosome complex exonuclease RRP41 | HC |
           chr8:32861534-32866106 | 20130731
          Length = 286

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 141/161 (87%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE+ FI+GGIA DLRCDGRKRLTYRPI VETGVIPQA+GSAR+R+GATEVIASV
Sbjct: 1   MVGLSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASV 60

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
           KAELGKPSL+QPDKGKVSIYIDCSSTAEPAFEGRG D LSA+LS ALQR           
Sbjct: 61  KAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGA 120

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKV 161
            ID SSL+VVEGKICWDLYIDGLVVSSDGNLLD LGAAIKV
Sbjct: 121 AIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKV 161


>Medtr8g077430.2 | exosome complex exonuclease RRP41 | HC |
           chr8:32861534-32866106 | 20130731
          Length = 286

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 141/161 (87%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE+ FI+GGIA DLRCDGRKRLTYRPI VETGVIPQA+GSAR+R+GATEVIASV
Sbjct: 1   MVGLSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASV 60

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
           KAELGKPSL+QPDKGKVSIYIDCSSTAEPAFEGRG D LSA+LS ALQR           
Sbjct: 61  KAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGA 120

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKV 161
            ID SSL+VVEGKICWDLYIDGLVVSSDGNLLD LGAAIKV
Sbjct: 121 AIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKV 161


>Medtr8g077430.3 | exosome complex exonuclease RRP41 | HC |
           chr8:32861534-32866106 | 20130731
          Length = 286

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 141/161 (87%)

Query: 1   MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV 60
           MVGLSLGE+ FI+GGIA DLRCDGRKRLTYRPI VETGVIPQA+GSAR+R+GATEVIASV
Sbjct: 1   MVGLSLGEQCFIEGGIAHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASV 60

Query: 61  KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXX 120
           KAELGKPSL+QPDKGKVSIYIDCSSTAEPAFEGRG D LSA+LS ALQR           
Sbjct: 61  KAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGA 120

Query: 121 XIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKV 161
            ID SSL+VVEGKICWDLYIDGLVVSSDGNLLD LGAAIKV
Sbjct: 121 AIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKV 161


>Medtr8g077430.4 | exosome complex exonuclease RRP41 | HC |
           chr8:32862793-32866106 | 20130731
          Length = 217

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 75/92 (81%)

Query: 70  LQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXIDLSSLIV 129
           +QPDKGKVSIYIDCSSTAEPAFEGRG D LSA+LS ALQR            ID SSL+V
Sbjct: 1   MQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVV 60

Query: 130 VEGKICWDLYIDGLVVSSDGNLLDALGAAIKV 161
           VEGKICWDLYIDGLVVSSDGNLLD LGAAIKV
Sbjct: 61  VEGKICWDLYIDGLVVSSDGNLLDTLGAAIKV 92


>Medtr8g077430.5 | exosome complex exonuclease RRP41 | HC |
           chr8:32862793-32866106 | 20130731
          Length = 217

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 75/92 (81%)

Query: 70  LQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXIDLSSLIV 129
           +QPDKGKVSIYIDCSSTAEPAFEGRG D LSA+LS ALQR            ID SSL+V
Sbjct: 1   MQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVV 60

Query: 130 VEGKICWDLYIDGLVVSSDGNLLDALGAAIKV 161
           VEGKICWDLYIDGLVVSSDGNLLD LGAAIKV
Sbjct: 61  VEGKICWDLYIDGLVVSSDGNLLDTLGAAIKV 92


>Medtr1g063090.1 | exosome complex exonuclease RRP41 | HC |
           chr1:27736500-27739997 | 20130731
          Length = 298

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 14/171 (8%)

Query: 4   LSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAE 63
           L++ E+ FI+  +  +LR DGR  L YR + ++ G   + +GSA +++G T V++ V AE
Sbjct: 11  LTVNEKKFIESSLLSELRVDGRGSLEYRKLSIKFG---KDNGSAEVQLGETRVMSFVSAE 67

Query: 64  LGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXXXXI 122
           L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R            I
Sbjct: 68  LVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRESRAI 121

Query: 123 DLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALG----AAIKVFQESKLLL 169
           D  SL V+  K+ W + ID  ++ + GNL+DA      A++  F+ S+  L
Sbjct: 122 DTESLCVLSAKLVWAIRIDIHILDNAGNLVDAANIAALASLSTFRRSECSL 172


>Medtr2g019210.2 | exosome complex exonuclease RRP41 | HC |
           chr2:6209367-6213281 | 20130731
          Length = 364

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 14/171 (8%)

Query: 4   LSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAE 63
           L++ E+ FI+  +  +LR DGR  L YR + ++ G   +  GSA I++G T V++ V A+
Sbjct: 11  LTVNEKKFIESALLSELRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQ 67

Query: 64  LGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXXXXI 122
           L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R            I
Sbjct: 68  LVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRESRAI 121

Query: 123 DLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALG----AAIKVFQESKLLL 169
           D  SL ++  K+ W + ID  ++ + GNL+DA      A++K F+  +  L
Sbjct: 122 DTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSL 172


>Medtr2g019210.3 | exosome complex exonuclease RRP41 | HC |
           chr2:6209367-6212019 | 20130731
          Length = 364

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 14/171 (8%)

Query: 4   LSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAE 63
           L++ E+ FI+  +  +LR DGR  L YR + ++ G   +  GSA I++G T V++ V A+
Sbjct: 11  LTVNEKKFIESALLSELRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQ 67

Query: 64  LGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXXXXI 122
           L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R            I
Sbjct: 68  LVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRESRAI 121

Query: 123 DLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALG----AAIKVFQESKLLL 169
           D  SL ++  K+ W + ID  ++ + GNL+DA      A++K F+  +  L
Sbjct: 122 DTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSL 172


>Medtr2g019210.1 | exosome complex exonuclease RRP41 | HC |
           chr2:6209449-6213016 | 20130731
          Length = 449

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 95/171 (55%), Gaps = 14/171 (8%)

Query: 4   LSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAE 63
           L++ E+ FI+  +  +LR DGR  L YR + ++ G   +  GSA I++G T V++ V A+
Sbjct: 11  LTVNEKKFIESALLSELRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQ 67

Query: 64  LGKPSLLQPDKGKVSIYIDCSSTAEPAFE-GRGGDDLSAELSVALQRXXXXXXXXXXXXI 122
           L +P   +P++G +SI+ + S  A+P+FE GR G+  + EL   + R            I
Sbjct: 68  LVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR-----GLRESRAI 121

Query: 123 DLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALG----AAIKVFQESKLLL 169
           D  SL ++  K+ W + ID  ++ + GNL+DA      A++K F+  +  L
Sbjct: 122 DTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRPECSL 172


>Medtr1g007060.2 | exosome complex exonuclease RRP46 | HC |
           chr1:171864-178056 | 20130731
          Length = 284

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 8   ERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKP 67
           ERH     +A+ +R DGR     R   +  G +  A+GSA +++G+T ++ ++K E+  P
Sbjct: 31  ERH-----LAESIRSDGRPLREARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMIP 85

Query: 68  SLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXIDLSSL 127
           SL  PD+G ++I         P    R G    AE  V+ Q             IDL  L
Sbjct: 86  SLESPDEGCLAIDFHMPPICSPIV--RPGRPAEAEPVVSKQ---LSDTITSSGMIDLREL 140

Query: 128 IVVEGKICWDLYIDGLVVSSDGNLLD 153
            +V GK  W  Y+D   + +DG+L D
Sbjct: 141 SLVGGKAAWMAYLDIYCLDADGSLFD 166


>Medtr1g007060.1 | exosome complex exonuclease RRP46 | HC |
           chr1:171864-178799 | 20130731
          Length = 304

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 8   ERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKP 67
           ERH     +A+ +R DGR     R   +  G +  A+GSA +++G+T ++ ++K E+  P
Sbjct: 31  ERH-----LAESIRSDGRPLREARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMIP 85

Query: 68  SLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRXXXXXXXXXXXXIDLSSL 127
           SL  PD+G ++I         P    R G    AE  V+ Q             IDL  L
Sbjct: 86  SLESPDEGCLAIDFHMPPICSPIV--RPGRPAEAEPVVSKQ---LSDTITSSGMIDLREL 140

Query: 128 IVVEGKICWDLYIDGLVVSSDGNLLD 153
            +V GK  W  Y+D   + +DG+L D
Sbjct: 141 SLVGGKAAWMAYLDIYCLDADGSLFD 166