Miyakogusa Predicted Gene

Lj5g3v0483840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0483840.1 Non Characterized Hit- tr|I1K4D9|I1K4D9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46063 PE,70.17,0,
,CUFF.53069.1
         (422 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC | chr1:...   610   e-174
Medtr3g118420.1 | hypothetical protein | LC | chr3:55418799-5541...   117   2e-26

>Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC |
           chr1:11167445-11172254 | 20130731
          Length = 683

 Score =  610 bits (1572), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/388 (76%), Positives = 335/388 (86%), Gaps = 1/388 (0%)

Query: 32  MLCHTSQDVPNLQWYQNEFPKIKKLAHLLANVDSVNGRLVDMNSNSTIFSDQVEDEMCTF 91
           ML H+SQDV ++QWY++EFPKI KL  LLANVD++NGRLVD +SNSTIF DQ+E+EM TF
Sbjct: 1   MLYHSSQDVYDMQWYRSEFPKIIKLTQLLANVDTINGRLVDASSNSTIFDDQIENEMRTF 60

Query: 92  KSLVRVFVGSPSVQRKIKHALATSTTNTQHDSFTPFSEAVERHAMVVDSLTKVGNFLNVS 151
           KSLVR+F+GSP VQ K++  LA +T NTQHD+FTPFS+  ER   V+DSLTKV NFL+VS
Sbjct: 61  KSLVRLFIGSPFVQDKMRRVLALNT-NTQHDAFTPFSKTTEREPRVIDSLTKVSNFLDVS 119

Query: 152 AQQRKVVRFKVAQQVTQHHIWTGVLKGTLNNFAADLDCFDSQGLNEGTILGKQIVHSCLK 211
           AQQRKVVRFKV  QVTQHHIWTG LK TLNNFA DLD   SQG NEGT LG+QI+HSCLK
Sbjct: 120 AQQRKVVRFKVCPQVTQHHIWTGALKETLNNFAVDLDYLASQGSNEGTTLGQQIIHSCLK 179

Query: 212 LLTETAICSDIDSSSWMKLSPSKTISSSDSQKWEDVLMMFNDLIECCKSETKLKLHVAKA 271
            LTETA  SD DSSSWMK +PSK ++SSDSQKWEDVL MFNDLI+CCKSET+LK HVAK 
Sbjct: 180 FLTETASFSDADSSSWMKFAPSKIVNSSDSQKWEDVLAMFNDLIKCCKSETRLKSHVAKV 239

Query: 272 EAMKEGLFQIKDILIDNSIGYKEVRHQEHLVQKKLSKTLGHSSRCLFTLLQYYLYGRVTD 331
           E MKEGL  IKDI IDNSI YK+ R+ + LVQKKLSKTLGHSS CLFTLLQYYLYGRVTD
Sbjct: 240 EVMKEGLLHIKDITIDNSIAYKDARYLQILVQKKLSKTLGHSSGCLFTLLQYYLYGRVTD 299

Query: 332 VEVDMRGGIYGSGKDNRFCLFMGRILTSDSEKMVGRGVKQLDRVLGLFKFVWETAGMKGH 391
           +EVD+ GGIY +G D+RFCL MGRILTSDSE+MVGRGVKQLDR LGLFKFVWETAGMKGH
Sbjct: 300 IEVDLCGGIYKNGNDSRFCLSMGRILTSDSERMVGRGVKQLDRALGLFKFVWETAGMKGH 359

Query: 392 LDLQGHLWCVGAENRMLRYRGNMYFVHG 419
           LDL+GHLWCVGA+NR+LRYRGNMYF+HG
Sbjct: 360 LDLRGHLWCVGADNRVLRYRGNMYFLHG 387


>Medtr3g118420.1 | hypothetical protein | LC |
           chr3:55418799-55419107 | 20130731
          Length = 102

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 29  LNSMLCHTSQDVPNLQWYQNEFPKIKKLAHLLANVDSVNGRLVDMNSNSTIFSDQVEDEM 88
           LN+ML H+SQDV + QWYQN F KI KL  LLANV  +NGRL+D+NSNSTIF DQ+E   
Sbjct: 5   LNAMLNHSSQDVYSRQWYQNNFQKIIKLTQLLANVGRINGRLLDVNSNSTIFDDQIEHGT 64

Query: 89  CTFKSLVRVFVGSPSVQRKIKHALATSTTNTQHDSFTPF 127
            TFK L+RVF+GSP VQ KI+  LA++T  T +    PF
Sbjct: 65  HTFKFLIRVFIGSPFVQHKIRQVLASNTYKTTY--IYPF 101