Miyakogusa Predicted Gene
- Lj5g3v0455900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0455900.1 tr|B9IKC9|B9IKC9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_668840 PE=4
SV=1,84.29,0,ZF_PHD_2,Zinc finger, PHD-finger; DUF3594,Protein of
unknown function DUF3594; PHD,Zinc finger, PHD-,CUFF.53001.1
(256 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g015185.1 | PHD finger alfin-like protein | HC | chr1:3751... 332 2e-91
Medtr8g019520.2 | alfin-like transcription factor | HC | chr8:68... 320 1e-87
Medtr8g019520.1 | alfin-like transcription factor | HC | chr8:68... 320 1e-87
Medtr2g040990.1 | PHD finger alfin-like protein | HC | chr2:1796... 305 3e-83
Medtr4g134510.1 | PHD finger alfin-like protein | HC | chr4:5632... 291 3e-79
Medtr2g099500.1 | PHD finger alfin-like protein | HC | chr2:4265... 283 8e-77
Medtr4g015830.1 | PHD finger alfin-like protein | HC | chr4:4791... 247 9e-66
Medtr7g068590.1 | PHD finger alfin-like protein | HC | chr7:2513... 240 1e-63
Medtr1g015185.2 | PHD finger alfin-like protein | HC | chr1:3751... 235 3e-62
Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |... 82 4e-16
>Medtr1g015185.1 | PHD finger alfin-like protein | HC |
chr1:3751255-3746618 | 20130731
Length = 263
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/259 (66%), Positives = 181/259 (69%), Gaps = 7/259 (2%)
Query: 3 GGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXX 62
G YNPRTVEEVFRDFKGRRAALIKALTTDV+ FYQQCDPEKENLCLYGFPSEQW
Sbjct: 5 GAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLP 64
Query: 63 XXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRL 122
GINFARDGMQ+KDWLSLVAVHSDAWLLSVAFYFGARFGFDK+DRKRL
Sbjct: 65 AEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRL 124
Query: 123 FGMINDLPTVFEVVTGVAKKQGXXXXX----XXXXXXXXXXXXEPQVVKYSK--GLISKX 176
F MINDLPT+FE VTG +KQG EPQ K+SK + +
Sbjct: 125 FNMINDLPTIFEAVTGSGRKQGKEKSVSNNSSTKSKSNSKRSSEPQ-PKFSKPMAMAMQM 183
Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPA 236
TLCGACG+SYAADEFWICCDICEKWFHGKCVKITPA
Sbjct: 184 QSKDEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPA 243
Query: 237 RAEHIKQYKCPSCSNKRAR 255
RAEHIKQYKCP+CSNKRAR
Sbjct: 244 RAEHIKQYKCPACSNKRAR 262
>Medtr8g019520.2 | alfin-like transcription factor | HC |
chr8:6883362-6878948 | 20130731
Length = 257
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/258 (64%), Positives = 176/258 (68%), Gaps = 16/258 (6%)
Query: 6 YNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXX 65
YNPRTVEEVFRDFKGRRA LIKALTTDVEEFY QCDPEKENLCLYGFPSEQW
Sbjct: 7 YNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEE 66
Query: 66 XXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGM 125
GINFARDGMQ+KDWLSLVAVHSD+WL+++A+YFGARFGFDKSDRKRLF M
Sbjct: 67 VPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNM 126
Query: 126 INDLPTVFEVVTGVAKKQ-------GXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXX 178
INDLP+++EVVTG AKKQ EPQ VK +K L
Sbjct: 127 INDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPEPQ-VKQTKPL------ 179
Query: 179 XXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARA 238
TLCGACGE Y DEFWICCDICEKWFHGKCVKITPARA
Sbjct: 180 -ELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARA 238
Query: 239 EHIKQYKCPSCS-NKRAR 255
EHIKQYKCPSCS NKRAR
Sbjct: 239 EHIKQYKCPSCSNNKRAR 256
>Medtr8g019520.1 | alfin-like transcription factor | HC |
chr8:6883372-6878935 | 20130731
Length = 256
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/257 (64%), Positives = 176/257 (68%), Gaps = 15/257 (5%)
Query: 6 YNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXX 65
YNPRTVEEVFRDFKGRRA LIKALTTDVEEFY QCDPEKENLCLYGFPSEQW
Sbjct: 7 YNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEE 66
Query: 66 XXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGM 125
GINFARDGMQ+KDWLSLVAVHSD+WL+++A+YFGARFGFDKSDRKRLF M
Sbjct: 67 VPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNM 126
Query: 126 INDLPTVFEVVTGVAKKQGXXXXXXXXX------XXXXXXXXEPQVVKYSKGLISKXXXX 179
INDLP+++EVVTG AKKQ EPQ VK +K L
Sbjct: 127 INDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPEPQ-VKQTKPL------- 178
Query: 180 XXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAE 239
TLCGACGE Y DEFWICCDICEKWFHGKCVKITPARAE
Sbjct: 179 ELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAE 238
Query: 240 HIKQYKCPSCS-NKRAR 255
HIKQYKCPSCS NKRAR
Sbjct: 239 HIKQYKCPSCSNNKRAR 255
>Medtr2g040990.1 | PHD finger alfin-like protein | HC |
chr2:17960762-17956593 | 20130731
Length = 253
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/260 (60%), Positives = 172/260 (66%), Gaps = 19/260 (7%)
Query: 2 DGGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXX 61
DG ++PRTVE VFRDFKGRRA LIKALTTDVE+FYQQCDPEKENL LYG+P E W
Sbjct: 6 DGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTL 65
Query: 62 XXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKR 121
GINFARDGMQ+KDWLSLVAVHSD WLLSVAFYFGARFGFDK+DRKR
Sbjct: 66 PAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKR 125
Query: 122 LFGMINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXE----PQVVKYSKGLISKXX 177
LF +INDLPT+FEVVTG AKKQ ++ KYSK +
Sbjct: 126 LFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSIKSKSGSKARGSELAKYSKPPAKEDD 185
Query: 178 XXXXXXXXXXXXXXXXXXXXXXXTLCGACGESY--AADEFWICCDICEKWFHGKCVKITP 235
C ACGESY A+DEFWICCDICEKW+HGKCVKITP
Sbjct: 186 EGVDDEEEDQGE-------------CAACGESYVSASDEFWICCDICEKWYHGKCVKITP 232
Query: 236 ARAEHIKQYKCPSCSNKRAR 255
ARAEHIKQYKCP+C+NKR R
Sbjct: 233 ARAEHIKQYKCPACNNKRVR 252
>Medtr4g134510.1 | PHD finger alfin-like protein | HC |
chr4:56329915-56334966 | 20130731
Length = 256
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 166/257 (64%), Gaps = 5/257 (1%)
Query: 1 MDGGAYNP--RTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 58
M+G A +P RTVEEVF D+KGRRA LIKALTTDVE+FYQ CDPEKENLCLYGFP+E W
Sbjct: 1 MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWE 60
Query: 59 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 118
GINFARDGMQ+KDWLSLVAVHSD+WLL+VAFYFGARFGF K+D
Sbjct: 61 VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKND 120
Query: 119 RKRLFGMINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXX 178
RKRLF MINDLPTVFE+ TG AK+ S+ +K
Sbjct: 121 RKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQ---TKGVK 177
Query: 179 XXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARA 238
CGACG++Y DEFWICCD+CEKWFHGKCVKITPA+A
Sbjct: 178 MSAPVKEEVDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKA 237
Query: 239 EHIKQYKCPSCSNKRAR 255
EHIKQYKCP CS K+ R
Sbjct: 238 EHIKQYKCPGCSIKKPR 254
>Medtr2g099500.1 | PHD finger alfin-like protein | HC |
chr2:42658288-42662190 | 20130731
Length = 250
Score = 283 bits (725), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 161/248 (64%), Gaps = 4/248 (1%)
Query: 9 RTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXXXXX 68
RTVE++F DFK RR +IKALT DVE+FY+QCDPEKENLCLYG +E W
Sbjct: 6 RTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPP 65
Query: 69 XXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGMIND 128
GINFARDGMQ+KDWL+LVAVHSD WLLS+AFYFGARFGFDK+DRKRLF +IN+
Sbjct: 66 EIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINE 125
Query: 129 LPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXXXXXXXXXXXX 188
LPTVFEVVTG AKKQ ++ S+
Sbjct: 126 LPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQ---SRQPKAALLPKDEEE 182
Query: 189 XXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS 248
CGACG+S ADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS
Sbjct: 183 ELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS 242
Query: 249 C-SNKRAR 255
C SNKRAR
Sbjct: 243 CSSNKRAR 250
>Medtr4g015830.1 | PHD finger alfin-like protein | HC |
chr4:4791805-4787747 | 20130731
Length = 240
Score = 247 bits (630), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 126/251 (50%), Positives = 152/251 (60%), Gaps = 15/251 (5%)
Query: 5 AYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXX 64
A +PRTVEE+F+DF RR +++ALT DV+EFY CDP+K+NLCLYG +E W
Sbjct: 4 ASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTLPAE 63
Query: 65 XXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFG 124
GINFARDGM +DWLSLVAVHSD+WLLSVAFY GAR ++++RKRLF
Sbjct: 64 EVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFS 121
Query: 125 MINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXXXXXXXX 184
+IN+LPTVFEVVT + VK + L+
Sbjct: 122 LINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLVDD--------- 172
Query: 185 XXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQY 244
TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPA+AE IKQY
Sbjct: 173 ----QGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQY 228
Query: 245 KCPSCSNKRAR 255
KCPSCS KR R
Sbjct: 229 KCPSCSIKRGR 239
>Medtr7g068590.1 | PHD finger alfin-like protein | HC |
chr7:25139885-25143273 | 20130731
Length = 242
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 152/253 (60%), Gaps = 17/253 (6%)
Query: 5 AYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXX 64
A +PRTVEE+F+D+ RR A+++ALT DV+EFY CDP+K+NLCLYG +E W
Sbjct: 4 ASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTLPAE 63
Query: 65 XXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFG 124
GINFARDGM +DWLSLVAVHSD+WLLSVAFY GAR ++++RKRLF
Sbjct: 64 EVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFS 121
Query: 125 MINDLPTVFEVVTG--VAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXXXXXX 182
+IN+LPTVFE+VT K + QV K +
Sbjct: 122 LINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDD------- 174
Query: 183 XXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIK 242
TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPA+AE IK
Sbjct: 175 ------GYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIK 228
Query: 243 QYKCPSCSNKRAR 255
QYKCP CS +R R
Sbjct: 229 QYKCPQCSIRRNR 241
>Medtr1g015185.2 | PHD finger alfin-like protein | HC |
chr1:3751249-3746646 | 20130731
Length = 206
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/142 (78%), Positives = 117/142 (82%)
Query: 3 GGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXX 62
G YNPRTVEEVFRDFKGRRAALIKALTTDV+ FYQQCDPEKENLCLYGFPSEQW
Sbjct: 5 GAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLP 64
Query: 63 XXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRL 122
GINFARDGMQ+KDWLSLVAVHSDAWLLSVAFYFGARFGFDK+DRKRL
Sbjct: 65 AEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRL 124
Query: 123 FGMINDLPTVFEVVTGVAKKQG 144
F MINDLPT+FE VTG +KQG
Sbjct: 125 FNMINDLPTIFEAVTGSGRKQG 146
>Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |
20130731
Length = 152
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 119 RKRLFGMINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXE----PQVVKYSKGLIS 174
RKRLF INDLPT+FEVVTG AKKQ ++ KYSK
Sbjct: 29 RKRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAK 88
Query: 175 KXXXXXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVK-I 233
+ C ACGE+Y + W+HGKCVK I
Sbjct: 89 EDDEEVDDEEEYQGE-------------CTACGENYVS------------WYHGKCVKKI 123
Query: 234 TPARAEHIKQYKCPSCSNKRAR 255
TPA+AE IKQY+CP+C+NKR R
Sbjct: 124 TPAQAEQIKQYRCPTCNNKRVR 145