Miyakogusa Predicted Gene

Lj5g3v0455900.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0455900.1 tr|B9IKC9|B9IKC9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_668840 PE=4
SV=1,84.29,0,ZF_PHD_2,Zinc finger, PHD-finger; DUF3594,Protein of
unknown function DUF3594; PHD,Zinc finger, PHD-,CUFF.53001.1
         (256 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g015185.1 | PHD finger alfin-like protein | HC | chr1:3751...   332   2e-91
Medtr8g019520.2 | alfin-like transcription factor | HC | chr8:68...   320   1e-87
Medtr8g019520.1 | alfin-like transcription factor | HC | chr8:68...   320   1e-87
Medtr2g040990.1 | PHD finger alfin-like protein | HC | chr2:1796...   305   3e-83
Medtr4g134510.1 | PHD finger alfin-like protein | HC | chr4:5632...   291   3e-79
Medtr2g099500.1 | PHD finger alfin-like protein | HC | chr2:4265...   283   8e-77
Medtr4g015830.1 | PHD finger alfin-like protein | HC | chr4:4791...   247   9e-66
Medtr7g068590.1 | PHD finger alfin-like protein | HC | chr7:2513...   240   1e-63
Medtr1g015185.2 | PHD finger alfin-like protein | HC | chr1:3751...   235   3e-62
Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |...    82   4e-16

>Medtr1g015185.1 | PHD finger alfin-like protein | HC |
           chr1:3751255-3746618 | 20130731
          Length = 263

 Score =  332 bits (852), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/259 (66%), Positives = 181/259 (69%), Gaps = 7/259 (2%)

Query: 3   GGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXX 62
           G  YNPRTVEEVFRDFKGRRAALIKALTTDV+ FYQQCDPEKENLCLYGFPSEQW     
Sbjct: 5   GAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLP 64

Query: 63  XXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRL 122
                        GINFARDGMQ+KDWLSLVAVHSDAWLLSVAFYFGARFGFDK+DRKRL
Sbjct: 65  AEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRL 124

Query: 123 FGMINDLPTVFEVVTGVAKKQGXXXXX----XXXXXXXXXXXXEPQVVKYSK--GLISKX 176
           F MINDLPT+FE VTG  +KQG                     EPQ  K+SK   +  + 
Sbjct: 125 FNMINDLPTIFEAVTGSGRKQGKEKSVSNNSSTKSKSNSKRSSEPQ-PKFSKPMAMAMQM 183

Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPA 236
                                   TLCGACG+SYAADEFWICCDICEKWFHGKCVKITPA
Sbjct: 184 QSKDEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPA 243

Query: 237 RAEHIKQYKCPSCSNKRAR 255
           RAEHIKQYKCP+CSNKRAR
Sbjct: 244 RAEHIKQYKCPACSNKRAR 262


>Medtr8g019520.2 | alfin-like transcription factor | HC |
           chr8:6883362-6878948 | 20130731
          Length = 257

 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/258 (64%), Positives = 176/258 (68%), Gaps = 16/258 (6%)

Query: 6   YNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXX 65
           YNPRTVEEVFRDFKGRRA LIKALTTDVEEFY QCDPEKENLCLYGFPSEQW        
Sbjct: 7   YNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEE 66

Query: 66  XXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGM 125
                     GINFARDGMQ+KDWLSLVAVHSD+WL+++A+YFGARFGFDKSDRKRLF M
Sbjct: 67  VPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNM 126

Query: 126 INDLPTVFEVVTGVAKKQ-------GXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXX 178
           INDLP+++EVVTG AKKQ                         EPQ VK +K L      
Sbjct: 127 INDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPEPQ-VKQTKPL------ 179

Query: 179 XXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARA 238
                                 TLCGACGE Y  DEFWICCDICEKWFHGKCVKITPARA
Sbjct: 180 -ELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARA 238

Query: 239 EHIKQYKCPSCS-NKRAR 255
           EHIKQYKCPSCS NKRAR
Sbjct: 239 EHIKQYKCPSCSNNKRAR 256


>Medtr8g019520.1 | alfin-like transcription factor | HC |
           chr8:6883372-6878935 | 20130731
          Length = 256

 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/257 (64%), Positives = 176/257 (68%), Gaps = 15/257 (5%)

Query: 6   YNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXX 65
           YNPRTVEEVFRDFKGRRA LIKALTTDVEEFY QCDPEKENLCLYGFPSEQW        
Sbjct: 7   YNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYTQCDPEKENLCLYGFPSEQWEVNLPAEE 66

Query: 66  XXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGM 125
                     GINFARDGMQ+KDWLSLVAVHSD+WL+++A+YFGARFGFDKSDRKRLF M
Sbjct: 67  VPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNM 126

Query: 126 INDLPTVFEVVTGVAKKQGXXXXXXXXX------XXXXXXXXEPQVVKYSKGLISKXXXX 179
           INDLP+++EVVTG AKKQ                        EPQ VK +K L       
Sbjct: 127 INDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPEPQ-VKQTKPL------- 178

Query: 180 XXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAE 239
                                TLCGACGE Y  DEFWICCDICEKWFHGKCVKITPARAE
Sbjct: 179 ELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAE 238

Query: 240 HIKQYKCPSCS-NKRAR 255
           HIKQYKCPSCS NKRAR
Sbjct: 239 HIKQYKCPSCSNNKRAR 255


>Medtr2g040990.1 | PHD finger alfin-like protein | HC |
           chr2:17960762-17956593 | 20130731
          Length = 253

 Score =  305 bits (781), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/260 (60%), Positives = 172/260 (66%), Gaps = 19/260 (7%)

Query: 2   DGGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXX 61
           DG  ++PRTVE VFRDFKGRRA LIKALTTDVE+FYQQCDPEKENL LYG+P E W    
Sbjct: 6   DGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTL 65

Query: 62  XXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKR 121
                         GINFARDGMQ+KDWLSLVAVHSD WLLSVAFYFGARFGFDK+DRKR
Sbjct: 66  PAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKR 125

Query: 122 LFGMINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXE----PQVVKYSKGLISKXX 177
           LF +INDLPT+FEVVTG AKKQ                        ++ KYSK    +  
Sbjct: 126 LFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSIKSKSGSKARGSELAKYSKPPAKEDD 185

Query: 178 XXXXXXXXXXXXXXXXXXXXXXXTLCGACGESY--AADEFWICCDICEKWFHGKCVKITP 235
                                    C ACGESY  A+DEFWICCDICEKW+HGKCVKITP
Sbjct: 186 EGVDDEEEDQGE-------------CAACGESYVSASDEFWICCDICEKWYHGKCVKITP 232

Query: 236 ARAEHIKQYKCPSCSNKRAR 255
           ARAEHIKQYKCP+C+NKR R
Sbjct: 233 ARAEHIKQYKCPACNNKRVR 252


>Medtr4g134510.1 | PHD finger alfin-like protein | HC |
           chr4:56329915-56334966 | 20130731
          Length = 256

 Score =  291 bits (746), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/257 (57%), Positives = 166/257 (64%), Gaps = 5/257 (1%)

Query: 1   MDGGAYNP--RTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 58
           M+G A +P  RTVEEVF D+KGRRA LIKALTTDVE+FYQ CDPEKENLCLYGFP+E W 
Sbjct: 1   MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWE 60

Query: 59  XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSD 118
                            GINFARDGMQ+KDWLSLVAVHSD+WLL+VAFYFGARFGF K+D
Sbjct: 61  VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKND 120

Query: 119 RKRLFGMINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXX 178
           RKRLF MINDLPTVFE+ TG AK+                          S+   +K   
Sbjct: 121 RKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQ---TKGVK 177

Query: 179 XXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARA 238
                                   CGACG++Y  DEFWICCD+CEKWFHGKCVKITPA+A
Sbjct: 178 MSAPVKEEVDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKA 237

Query: 239 EHIKQYKCPSCSNKRAR 255
           EHIKQYKCP CS K+ R
Sbjct: 238 EHIKQYKCPGCSIKKPR 254


>Medtr2g099500.1 | PHD finger alfin-like protein | HC |
           chr2:42658288-42662190 | 20130731
          Length = 250

 Score =  283 bits (725), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 145/248 (58%), Positives = 161/248 (64%), Gaps = 4/248 (1%)

Query: 9   RTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXXXXX 68
           RTVE++F DFK RR  +IKALT DVE+FY+QCDPEKENLCLYG  +E W           
Sbjct: 6   RTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPP 65

Query: 69  XXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGMIND 128
                  GINFARDGMQ+KDWL+LVAVHSD WLLS+AFYFGARFGFDK+DRKRLF +IN+
Sbjct: 66  EIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINE 125

Query: 129 LPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXXXXXXXXXXXX 188
           LPTVFEVVTG AKKQ                         ++   S+             
Sbjct: 126 LPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQ---SRQPKAALLPKDEEE 182

Query: 189 XXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS 248
                         CGACG+S  ADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS
Sbjct: 183 ELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPS 242

Query: 249 C-SNKRAR 255
           C SNKRAR
Sbjct: 243 CSSNKRAR 250


>Medtr4g015830.1 | PHD finger alfin-like protein | HC |
           chr4:4791805-4787747 | 20130731
          Length = 240

 Score =  247 bits (630), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 126/251 (50%), Positives = 152/251 (60%), Gaps = 15/251 (5%)

Query: 5   AYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXX 64
           A +PRTVEE+F+DF  RR  +++ALT DV+EFY  CDP+K+NLCLYG  +E W       
Sbjct: 4   ASSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHTNESWEVTLPAE 63

Query: 65  XXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFG 124
                      GINFARDGM  +DWLSLVAVHSD+WLLSVAFY GAR   ++++RKRLF 
Sbjct: 64  EVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFS 121

Query: 125 MINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXXXXXXXX 184
           +IN+LPTVFEVVT     +                      VK +  L+           
Sbjct: 122 LINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKLVDD--------- 172

Query: 185 XXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQY 244
                           TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPA+AE IKQY
Sbjct: 173 ----QGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQY 228

Query: 245 KCPSCSNKRAR 255
           KCPSCS KR R
Sbjct: 229 KCPSCSIKRGR 239


>Medtr7g068590.1 | PHD finger alfin-like protein | HC |
           chr7:25139885-25143273 | 20130731
          Length = 242

 Score =  240 bits (612), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/253 (49%), Positives = 152/253 (60%), Gaps = 17/253 (6%)

Query: 5   AYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXX 64
           A +PRTVEE+F+D+  RR A+++ALT DV+EFY  CDP+K+NLCLYG  +E W       
Sbjct: 4   ASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTLPAE 63

Query: 65  XXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFG 124
                      GINFARDGM  +DWLSLVAVHSD+WLLSVAFY GAR   ++++RKRLF 
Sbjct: 64  EVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGAR--LNRNERKRLFS 121

Query: 125 MINDLPTVFEVVTG--VAKKQGXXXXXXXXXXXXXXXXXEPQVVKYSKGLISKXXXXXXX 182
           +IN+LPTVFE+VT     K                    + QV    K  +         
Sbjct: 122 LINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDD------- 174

Query: 183 XXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIK 242
                             TLCG+CG +Y ADEFWI CDICE+W+HGKCVKITPA+AE IK
Sbjct: 175 ------GYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIK 228

Query: 243 QYKCPSCSNKRAR 255
           QYKCP CS +R R
Sbjct: 229 QYKCPQCSIRRNR 241


>Medtr1g015185.2 | PHD finger alfin-like protein | HC |
           chr1:3751249-3746646 | 20130731
          Length = 206

 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 117/142 (82%)

Query: 3   GGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXX 62
           G  YNPRTVEEVFRDFKGRRAALIKALTTDV+ FYQQCDPEKENLCLYGFPSEQW     
Sbjct: 5   GAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLP 64

Query: 63  XXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRL 122
                        GINFARDGMQ+KDWLSLVAVHSDAWLLSVAFYFGARFGFDK+DRKRL
Sbjct: 65  AEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRL 124

Query: 123 FGMINDLPTVFEVVTGVAKKQG 144
           F MINDLPT+FE VTG  +KQG
Sbjct: 125 FNMINDLPTIFEAVTGSGRKQG 146


>Medtr8g066480.1 | PHD6, putative | HC | chr8:27655204-27653875 |
           20130731
          Length = 152

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 66/142 (46%), Gaps = 30/142 (21%)

Query: 119 RKRLFGMINDLPTVFEVVTGVAKKQGXXXXXXXXXXXXXXXXXE----PQVVKYSKGLIS 174
           RKRLF  INDLPT+FEVVTG AKKQ                        ++ KYSK    
Sbjct: 29  RKRLFTPINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAK 88

Query: 175 KXXXXXXXXXXXXXXXXXXXXXXXXXTLCGACGESYAADEFWICCDICEKWFHGKCVK-I 233
           +                           C ACGE+Y +            W+HGKCVK I
Sbjct: 89  EDDEEVDDEEEYQGE-------------CTACGENYVS------------WYHGKCVKKI 123

Query: 234 TPARAEHIKQYKCPSCSNKRAR 255
           TPA+AE IKQY+CP+C+NKR R
Sbjct: 124 TPAQAEQIKQYRCPTCNNKRVR 145