Miyakogusa Predicted Gene

Lj5g3v0422370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0422370.1 Non Characterized Hit- tr|F4I1X2|F4I1X2_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At1,42.96,8e-19,DUF2431,Domain of unknown function DUF2431;
SUBFAMILY NOT NAMED,NULL; PHENYLALANYL-TRNA
SYNTHETASE,N,gene.g58837.t1.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g061070.1 | DUF2431 domain protein | LC | chr3:24245457-24...   263   9e-71
Medtr6g082260.1 | DUF2431 domain protein | HC | chr6:30709133-30...   128   6e-30
Medtr5g093740.1 | DUF2431 domain protein | LC | chr5:40928768-40...   126   2e-29
Medtr6g082340.1 | methyltransferase small domain protein | HC | ...   124   7e-29
Medtr6g082310.1 | DUF2431 domain protein | LC | chr6:30728134-30...   119   3e-27
Medtr2g027540.1 | nucleic acid-binding protein, putative | HC | ...   100   1e-21
Medtr3g061060.1 | DUF2431 domain protein | LC | chr3:24242369-24...    77   2e-14
Medtr2g027540.2 | nucleic acid-binding protein, putative | HC | ...    76   3e-14

>Medtr3g061070.1 | DUF2431 domain protein | LC |
           chr3:24245457-24248169 | 20130731
          Length = 467

 Score =  263 bits (673), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 147/275 (53%), Positives = 170/275 (61%), Gaps = 52/275 (18%)

Query: 1   MRRFDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPF 60
           MRRFDRVIFNFPHAGFHRKEDN +MIKMH +LVFGFFKNA  MLRANGE+HVNHKTT PF
Sbjct: 119 MRRFDRVIFNFPHAGFHRKEDNLMMIKMHMDLVFGFFKNACHMLRANGEIHVNHKTTPPF 178

Query: 61  NTWNIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKFIYNPKA 120
             WNIEKLA Q FLT+I+C DF KEDYPGYNNKRGDSYRCD+PFPLG CSTFKFI NP++
Sbjct: 179 IDWNIEKLAKQCFLTMIDCIDFNKEDYPGYNNKRGDSYRCDDPFPLGKCSTFKFICNPRS 238

Query: 121 R-----------------LAFQEIQDAVEQLPTPIGLHY---------------YPQASH 148
                             L F E   ++ Q P P+ L+Y               YPQ +H
Sbjct: 239 MKNHLRGNHIEISRQQTILPFHEEIQSIAQFPPPVDLNYLPRTSLFPKMNQFNCYPQTNH 298

Query: 149 IQRMNEHTPISRDY-LNQGFNRIS----------PSAAYHGHG------INLGAQRSLQP 191
             ++NE  PI  ++ L  G+N IS           S A    G      +    +R + P
Sbjct: 299 FPKLNE--PIRSEFDLRNGYNTISREINNVTEIHGSVACSADGYRYARDMTQDTRRLVPP 356

Query: 192 MESLQSLQPWPASTNVRYSPTEHV-GTMNTVPLTS 225
           MESLQSLQPWP  TN RYS TE +  TM+  P  S
Sbjct: 357 MESLQSLQPWPTPTNCRYSLTEPLRRTMDMAPPLS 391


>Medtr6g082260.1 | DUF2431 domain protein | HC |
           chr6:30709133-30707666 | 20130731
          Length = 211

 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 75/111 (67%)

Query: 4   FDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPFNTW 63
           FDR+IFNFPH+GF + E ++ +I  H++LV GF  +A  ML   GE+H+ HKT  PF+ W
Sbjct: 92  FDRIIFNFPHSGFFQNESDAWVIGEHKKLVSGFLGSAKYMLNVGGEIHITHKTAHPFSNW 151

Query: 64  NIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKF 114
           NI+ LA    L  IE   F +  YPGY NK+G  ++CD+ FP+G CSTFKF
Sbjct: 152 NIKNLAENEKLLFIEEVTFYQHFYPGYGNKKGAGFKCDKSFPIGKCSTFKF 202


>Medtr5g093740.1 | DUF2431 domain protein | LC |
           chr5:40928768-40931464 | 20130731
          Length = 529

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 74/113 (65%)

Query: 2   RRFDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPFN 61
           + FDRV++NFPHAGF   E+N   I++H+E+V+GF K+A  +L  +GEVH+ HK   PF+
Sbjct: 93  KIFDRVVYNFPHAGFDMAENNLNQIRLHQEVVWGFLKSAKKILTKDGEVHITHKNNNPFS 152

Query: 62  TWNIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKF 114
            W I KL  +  L  +E   FK  DYPGY NKRG    CD  FP+G  STFKF
Sbjct: 153 KWEIVKLGEKIGLVFVEKVPFKISDYPGYVNKRGSGDNCDRTFPVGESSTFKF 205



 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 9/154 (5%)

Query: 2   RRFDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPFN 61
           + FDR++FNFP   +         I+ H++LV GF +NA+ ML +NGEVHV  K   PFN
Sbjct: 344 KLFDRIVFNFPKDKY-----TPYKIQHHQKLVLGFLQNATEMLSSNGEVHVTLKIVNPFN 398

Query: 62  TWNIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKFIYNPKAR 121
            W+I KLA +  L L+E   FK  +YP Y NK G     ++ F +G C+TFKF    K R
Sbjct: 399 KWDIVKLAEKAGLILVEKVPFKMREYPCYANKIGSGSNWNQKFDVGSCNTFKF---SKGR 455

Query: 122 LAFQEIQDAVEQLPTPIGLHYYPQAS-HIQRMNE 154
              +      + L  P  LH    +   ++ +NE
Sbjct: 456 DVVESFVGLSDILVDPNSLHLKDASDCELKSLNE 489


>Medtr6g082340.1 | methyltransferase small domain protein | HC |
           chr6:30738874-30737745 | 20130731
          Length = 215

 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 77/112 (68%)

Query: 3   RFDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPFNT 62
           +FDR+IFNFPHAGF+  E +   I++HR LV GF +NA  ML   GE+H++HKT+ P++ 
Sbjct: 90  KFDRIIFNFPHAGFYFHEFHKSQIRLHRRLVRGFLQNARYMLSVGGEIHISHKTSQPYSE 149

Query: 63  WNIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKF 114
           W I+ LA    L LIE  DF++  YPGY NKRG   +C++ F +G  ST+KF
Sbjct: 150 WRIKDLAENVGLKLIEEVDFQRSFYPGYYNKRGSGSKCNQSFHIGRSSTYKF 201


>Medtr6g082310.1 | DUF2431 domain protein | LC |
           chr6:30728134-30726748 | 20130731
          Length = 206

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 74/111 (66%)

Query: 4   FDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPFNTW 63
           F R+IFNFPH+G   +E    +I+ H++LV GF ++A  MLR  GE+H+ HKT+ P++ W
Sbjct: 92  FHRIIFNFPHSGLFSREIYESVIEQHKKLVSGFLRSAKSMLRFFGEIHITHKTSYPYSNW 151

Query: 64  NIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKF 114
           NI+ LA    L+ IE  DF +  YPGY NKRG   +C + F +G CSTFKF
Sbjct: 152 NIKNLAENEDLSFIEEVDFHQVLYPGYINKRGAGSKCGQSFTIGECSTFKF 202


>Medtr2g027540.1 | nucleic acid-binding protein, putative | HC |
           chr2:10086430-10089465 | 20130731
          Length = 249

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

Query: 2   RRFDRVIFNFPHAGFHRKEDNSLMIKMHRELVFGFFKNASCMLRA-NGEVHVNHKTTTPF 60
           +RFD V++NFPH GF   E++   I+++++L+ GF  NA  +++   GE+HV HK   P+
Sbjct: 126 QRFDLVVYNFPHVGFLYPENSYCQIQLNKKLLKGFMANAKALVKKEGGEIHVTHKEGDPY 185

Query: 61  NTWNIEKLAMQNFLTLIECSDFKKEDYPGYNNKRGDSYRCDEPFPLGMCSTFKF 114
           N W++ + A +  L L +   F K+DYPGY+NKR      D  FP+G  ST+KF
Sbjct: 186 NKWDLVRKAEKRGLFLHQAVPFFKDDYPGYDNKRAHGKLSDLSFPVGEASTYKF 239


>Medtr3g061060.1 | DUF2431 domain protein | LC |
           chr3:24242369-24243603 | 20130731
          Length = 91

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 27/94 (28%)

Query: 24  LMIKMHRELVFGFFKNASCMLRANGEVHVNHKTTTPFNTWNIEKLAMQNFLTLIECSDFK 83
           +  +M+++LV+GFFKNAS ML  N E+HVNHKT  PF                       
Sbjct: 24  IKFRMYKDLVYGFFKNASHMLMTNDEIHVNHKTKPPFTN--------------------- 62

Query: 84  KEDYPGYNNKRGDSYRCDEPFPLGMCSTFKFIYN 117
                 YN+K+GD  RC++PF LG CSTFKFI N
Sbjct: 63  ------YNHKQGDGNRCNKPFYLGKCSTFKFIRN 90


>Medtr2g027540.2 | nucleic acid-binding protein, putative | HC |
           chr2:10086430-10089465 | 20130731
          Length = 225

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 27  KMHRELVFGFFKNASCMLRA-NGEVHVNHKTTTPFNTWNIEKLAMQNFLTLIECSDFKKE 85
           +++++L+ GF  NA  +++   GE+HV HK   P+N W++ + A +  L L +   F K+
Sbjct: 127 RLNKKLLKGFMANAKALVKKEGGEIHVTHKEGDPYNKWDLVRKAEKRGLFLHQAVPFFKD 186

Query: 86  DYPGYNNKRGDSYRCDEPFPLGMCSTFKF 114
           DYPGY+NKR      D  FP+G  ST+KF
Sbjct: 187 DYPGYDNKRAHGKLSDLSFPVGEASTYKF 215