Miyakogusa Predicted Gene

Lj5g3v0404930.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0404930.2 tr|G7K4U8|G7K4U8_MEDTR Cytochrome c oxidase
assembly protein COX15-like protein OS=Medicago
truncatu,85.43,0,CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15,NULL;
seg,NULL; HemeA_synth_type2,Heme A synthase, type ,CUFF.52959.2
         (455 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096830.1 | cytochrome C oxidase assembly protein COX15 | ...   715   0.0  
Medtr3g095790.1 | cytochrome C oxidase assembly protein COX15 | ...   700   0.0  
Medtr5g096830.2 | cytochrome C oxidase assembly protein COX15 | ...   577   e-164
Medtr5g096830.3 | cytochrome C oxidase assembly protein COX15 | ...   449   e-126

>Medtr5g096830.1 | cytochrome C oxidase assembly protein COX15 | HC
           | chr5:42354450-42358871 | 20130731
          Length = 459

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/460 (78%), Positives = 384/460 (83%), Gaps = 6/460 (1%)

Query: 1   MFGRGTAFSILKRSREAA-IHKL--RGTTTRPFSHPS-AQESFKFLSPSIAS-HGFRAFR 55
           MFGRG   S LKRS+EA  I KL  R T T PFSHP+  Q+SFKF +PS+ S H FR FR
Sbjct: 1   MFGRGAVGSFLKRSKEAFFIQKLVGRNTATVPFSHPAIEQQSFKFFNPSVVSTHFFRNFR 60

Query: 56  SLPIPKGHHVSYTRSFSKVVSAGAEHKEGLKLFVTGGAHAQKVVGIWLFGSAAWVFSMVX 115
           S PIPKGHHV +TR+FS VVSAGA+H+E LKL VTGG+ AQK VGIWLFGSAAWVFSMV 
Sbjct: 61  SHPIPKGHHVPFTRNFSTVVSAGAKHEE-LKLLVTGGSRAQKAVGIWLFGSAAWVFSMVV 119

Query: 116 XXXXXXXXXXXXXMTDWKFTGGLPPLSDEEWLQEFEKYKQSPEYKRVNKGMTIEEFKFIY 175
                        MTDWKFTG  PPL+DE WLQEFEKY+QSPEYKRVNKGM IEEFKFIY
Sbjct: 120 LGGLTRLTRSGLSMTDWKFTGEFPPLTDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKFIY 179

Query: 176 WMEYAHRMWGRALGVIFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKSGL 235
           WMEY HRMWGRALG++F LPYSYFLHKGYITLRLGLRLS LF LGAGQGLIGWWMVKSGL
Sbjct: 180 WMEYGHRMWGRALGIMFVLPYSYFLHKGYITLRLGLRLSVLFGLGAGQGLIGWWMVKSGL 239

Query: 236 EEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVTWVREAAKVRRL 295
           EEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAES+TWVR AAKV+RL
Sbjct: 240 EEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLTWVRGAAKVKRL 299

Query: 296 ALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPEDIFEMKPLIRNFFENTSTVQ 355
           ALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPEDI EMKPLIRNFFENTSTVQ
Sbjct: 300 ALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPEDILEMKPLIRNFFENTSTVQ 359

Query: 356 LDHRILATATLISVGALWGATRKLDIHPAVRSLIGSIVGMAALQVTLGVSTLLSYVPVSL 415
           L+HRILATATLISV ALW +TRKLDIHPAVRS+IG + GMA+LQV LG+STLLSYVPVSL
Sbjct: 360 LNHRILATATLISVSALWLSTRKLDIHPAVRSVIGGVFGMASLQVALGISTLLSYVPVSL 419

Query: 416 GTAHQAGAXXXXXXXXXXNHTVRXXXXXXXXXXXQVVKAN 455
           GTAHQAGA          NHTVR           QVVKAN
Sbjct: 420 GTAHQAGALTLLMFMLLLNHTVRRPSLSLLKSLPQVVKAN 459


>Medtr3g095790.1 | cytochrome C oxidase assembly protein COX15 | HC
           | chr3:43769208-43772320 | 20130731
          Length = 499

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/462 (77%), Positives = 379/462 (82%), Gaps = 17/462 (3%)

Query: 1   MFGRGTAFSILKRSREAA-IHKLRGTTTR----PFSHPSA--QESFKFLSPSIASHGFRA 53
           MFGR    +ILKRS+E   IHKL G  T     PFSHPS+  Q+SFKF +PSI++H FR 
Sbjct: 48  MFGR----AILKRSKEICLIHKLTGRKTTTTTIPFSHPSSIQQQSFKFFNPSISTHFFRT 103

Query: 54  FRSLPIPKGHHVSYTRSFSKVVSAGAEHKEGLKLFVTGGAHAQKVVGIWLFGSAAWVFSM 113
           FRS   PKGH VS      K VSAGA H EGLKL VTGG+HAQKVVGIWLFGSAAWVF+M
Sbjct: 104 FRSHNTPKGHRVS------KTVSAGAIHNEGLKLLVTGGSHAQKVVGIWLFGSAAWVFTM 157

Query: 114 VXXXXXXXXXXXXXXMTDWKFTGGLPPLSDEEWLQEFEKYKQSPEYKRVNKGMTIEEFKF 173
           V              MTDWKFTG  PPLSDE WLQEFEKY+QSPEYKRVNKGM IEEFKF
Sbjct: 158 VILGGLTRLTRSGLSMTDWKFTGEFPPLSDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKF 217

Query: 174 IYWMEYAHRMWGRALGVIFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKS 233
           IYWMEY HRMWGRALG++F LPYSYFLHKGYITLRL LR+SALF LGAGQGLIGWWMVKS
Sbjct: 218 IYWMEYGHRMWGRALGLMFVLPYSYFLHKGYITLRLALRVSALFGLGAGQGLIGWWMVKS 277

Query: 234 GLEEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVTWVREAAKVR 293
           GLEEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAES+TWVR AAKV+
Sbjct: 278 GLEEPPTEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLTWVRGAAKVK 337

Query: 294 RLALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPEDIFEMKPLIRNFFENTST 353
           RLALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPE+I EMKPLIRNFFENTST
Sbjct: 338 RLALPVSLLVGLTAVSGAFVAGNDAGHAFNTFPKMGDTWIPENILEMKPLIRNFFENTST 397

Query: 354 VQLDHRILATATLISVGALWGATRKLDIHPAVRSLIGSIVGMAALQVTLGVSTLLSYVPV 413
           VQL+HRILATATLISV ALW +TRKLDIHPAVRS+IG I GMA++QVTLG++TLLSYVPV
Sbjct: 398 VQLNHRILATATLISVSALWLSTRKLDIHPAVRSVIGGIFGMASVQVTLGITTLLSYVPV 457

Query: 414 SLGTAHQAGAXXXXXXXXXXNHTVRXXXXXXXXXXXQVVKAN 455
           SLGTAHQAGA          NHTVR           QVVKAN
Sbjct: 458 SLGTAHQAGALTLLTFMLLLNHTVRRPSSALLKSLPQVVKAN 499


>Medtr5g096830.2 | cytochrome C oxidase assembly protein COX15 | HC
           | chr5:42354422-42358768 | 20130731
          Length = 343

 Score =  577 bits (1486), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/327 (85%), Positives = 291/327 (88%)

Query: 129 MTDWKFTGGLPPLSDEEWLQEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMWGRAL 188
           MTDWKFTG  PPL+DE WLQEFEKY+QSPEYKRVNKGM IEEFKFIYWMEY HRMWGRAL
Sbjct: 17  MTDWKFTGEFPPLTDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKFIYWMEYGHRMWGRAL 76

Query: 189 GVIFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKSGLEEPPTEYSQPRVS 248
           G++F LPYSYFLHKGYITLRLGLRLS LF LGAGQGLIGWWMVKSGLEEPPTEYSQPRVS
Sbjct: 77  GIMFVLPYSYFLHKGYITLRLGLRLSVLFGLGAGQGLIGWWMVKSGLEEPPTEYSQPRVS 136

Query: 249 PYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVTWVREAAKVRRLALPVSLLVGLTAV 308
           PYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAES+TWVR AAKV+RLALPVSLLVGLTAV
Sbjct: 137 PYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLTWVRGAAKVKRLALPVSLLVGLTAV 196

Query: 309 SGAFVAGNDAGHAFNTFPKMGDTWIPEDIFEMKPLIRNFFENTSTVQLDHRILATATLIS 368
           SGAFVAGNDAGHAFNTFPKMGDTWIPEDI EMKPLIRNFFENTSTVQL+HRILATATLIS
Sbjct: 197 SGAFVAGNDAGHAFNTFPKMGDTWIPEDILEMKPLIRNFFENTSTVQLNHRILATATLIS 256

Query: 369 VGALWGATRKLDIHPAVRSLIGSIVGMAALQVTLGVSTLLSYVPVSLGTAHQAGAXXXXX 428
           V ALW +TRKLDIHPAVRS+IG + GMA+LQV LG+STLLSYVPVSLGTAHQAGA     
Sbjct: 257 VSALWLSTRKLDIHPAVRSVIGGVFGMASLQVALGISTLLSYVPVSLGTAHQAGALTLLM 316

Query: 429 XXXXXNHTVRXXXXXXXXXXXQVVKAN 455
                NHTVR           QVVKAN
Sbjct: 317 FMLLLNHTVRRPSLSLLKSLPQVVKAN 343


>Medtr5g096830.3 | cytochrome C oxidase assembly protein COX15 | HC
           | chr5:42354422-42358017 | 20130731
          Length = 251

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/228 (92%), Positives = 218/228 (95%)

Query: 129 MTDWKFTGGLPPLSDEEWLQEFEKYKQSPEYKRVNKGMTIEEFKFIYWMEYAHRMWGRAL 188
           MTDWKFTG  PPL+DE WLQEFEKY+QSPEYKRVNKGM IEEFKFIYWMEY HRMWGRAL
Sbjct: 17  MTDWKFTGEFPPLTDEAWLQEFEKYQQSPEYKRVNKGMKIEEFKFIYWMEYGHRMWGRAL 76

Query: 189 GVIFALPYSYFLHKGYITLRLGLRLSALFALGAGQGLIGWWMVKSGLEEPPTEYSQPRVS 248
           G++F LPYSYFLHKGYITLRLGLRLS LF LGAGQGLIGWWMVKSGLEEPPTEYSQPRVS
Sbjct: 77  GIMFVLPYSYFLHKGYITLRLGLRLSVLFGLGAGQGLIGWWMVKSGLEEPPTEYSQPRVS 136

Query: 249 PYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESVTWVREAAKVRRLALPVSLLVGLTAV 308
           PYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAES+TWVR AAKV+RLALPVSLLVGLTAV
Sbjct: 137 PYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLTWVRGAAKVKRLALPVSLLVGLTAV 196

Query: 309 SGAFVAGNDAGHAFNTFPKMGDTWIPEDIFEMKPLIRNFFENTSTVQL 356
           SGAFVAGNDAGHAFNTFPKMGDTWIPEDI EMKPLIRNFFENTSTVQ+
Sbjct: 197 SGAFVAGNDAGHAFNTFPKMGDTWIPEDILEMKPLIRNFFENTSTVQV 244