Miyakogusa Predicted Gene

Lj5g3v0380130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0380130.1 tr|A9PFA7|A9PFA7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_823661 PE=2
SV=1,55.56,5e-19,POLLEN SPECIFIC PROTEIN SF21,Pollen specific protein
SF21; N-MYC DOWNSTREAM REGULATED,Ndr; Ndr,Ndr,CUFF.52899.1
         (79 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g016510.1 | pollen-specific SF21-like protein | HC | chr1:...   135   1e-32
Medtr8g101710.1 | pollen-specific SF21-like protein | HC | chr8:...   132   7e-32
Medtr1g081240.2 | pollen-specific SF21-like protein | HC | chr1:...    80   4e-16
Medtr1g081240.1 | pollen-specific SF21-like protein | HC | chr1:...    80   4e-16

>Medtr1g016510.1 | pollen-specific SF21-like protein | HC |
           chr1:4421553-4416255 | 20130731
          Length = 349

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 71/75 (94%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESM 64
           ++VQ CGSMVTEEQPHAMLIP+EYFLMGYGLYR S+ SVSPRSPLSPSCISPEL+SPESM
Sbjct: 275 VEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSRKSVSPRSPLSPSCISPELFSPESM 334

Query: 65  GLKLKPIKTRISMEI 79
           GLKLKPIKTRI+ EI
Sbjct: 335 GLKLKPIKTRITGEI 349


>Medtr8g101710.1 | pollen-specific SF21-like protein | HC |
           chr8:42762703-42766823 | 20130731
          Length = 347

 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 69/75 (92%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMSVSPRSPLSPSCISPELYSPESM 64
           ++VQ CGSMVTEEQPHAMLIP+EYFLMGYGLYR  K S SPRSPLSPSCISPEL SPESM
Sbjct: 273 VEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPCKFSHSPRSPLSPSCISPELLSPESM 332

Query: 65  GLKLKPIKTRISMEI 79
           GLKLKPIKTR+S+E+
Sbjct: 333 GLKLKPIKTRVSLEV 347


>Medtr1g081240.2 | pollen-specific SF21-like protein | HC |
           chr1:36151859-36148396 | 20130731
          Length = 284

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 7/81 (8%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMS-------VSPRSPLSPSCISPE 57
           ++VQ CGS+VTEE P +M++PIE FLMG+G +R    +        SP SP   + ++PE
Sbjct: 203 VEVQACGSLVTEEHPISMIVPIERFLMGFGFHRQPHFASSSSNGSTSPASPSRHAIVAPE 262

Query: 58  LYSPESMGLKLKPIKTRISME 78
           L S ES+G+KLKPI+TR+ +E
Sbjct: 263 LLSQESLGIKLKPIRTRVRVE 283


>Medtr1g081240.1 | pollen-specific SF21-like protein | HC |
           chr1:36152313-36148396 | 20130731
          Length = 354

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 7/81 (8%)

Query: 5   LQVQECGSMVTEEQPHAMLIPIEYFLMGYGLYRSSKMS-------VSPRSPLSPSCISPE 57
           ++VQ CGS+VTEE P +M++PIE FLMG+G +R    +        SP SP   + ++PE
Sbjct: 273 VEVQACGSLVTEEHPISMIVPIERFLMGFGFHRQPHFASSSSNGSTSPASPSRHAIVAPE 332

Query: 58  LYSPESMGLKLKPIKTRISME 78
           L S ES+G+KLKPI+TR+ +E
Sbjct: 333 LLSQESLGIKLKPIRTRVRVE 353