Miyakogusa Predicted Gene

Lj5g3v0380100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0380100.1 tr|Q2HTC4|Q2HTC4_MEDTR Conserved oligomeric Golgi
complex component 4, related OS=Medicago
truncatul,84.63,0,COG4,Conserved oligomeric Golgi complex, subunit 4;
coiled-coil,NULL; COG4 transport protein,Conserv,CUFF.52896.1
         (449 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g118220.1 | component of oligomeric protein | HC | chr7:49...   757   0.0  
Medtr0014s0110.1 | hypothetical protein | LC | scaffold0014:7058...    60   6e-09

>Medtr7g118220.1 | component of oligomeric protein | HC |
           chr7:49069047-49065741 | 20130731
          Length = 747

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/449 (84%), Positives = 405/449 (90%), Gaps = 13/449 (2%)

Query: 7   STPR--GNGSEEDITGNGGAVTSSIDFGKAEAVEYVRSLTDVGAMTRLLHECIAHQRALD 64
           STP    NGS+E+          SIDFGKAEAVEYVR+LTDVGAMTRLLHECIAHQR+LD
Sbjct: 5   STPHTHPNGSDEENKW-------SIDFGKAEAVEYVRTLTDVGAMTRLLHECIAHQRSLD 57

Query: 65  TQLDDLLSQRADLDRHLVQLQRSSDVLDIVKSDSDHMLSNVSSTSDLADSVSRKVRELDL 124
            QLDDLLSQR DLDRHL+QLQRSSDVL+IV+SDSD+MLSNV+STS LAD VS KVRELDL
Sbjct: 58  MQLDDLLSQRTDLDRHLIQLQRSSDVLEIVQSDSDYMLSNVTSTSHLADQVSLKVRELDL 117

Query: 125 AQSRVRSTLHRIDAVVERGNCLDGGLRALDEEDYESAARYVQTFLQIDAQFKDSGSDQIQ 184
           AQSRVRSTLHRIDA+VERGNCLDG LRALD EDYES ARYVQTFL IDAQFKDSGSDQIQ
Sbjct: 118 AQSRVRSTLHRIDAIVERGNCLDGVLRALDTEDYESCARYVQTFLHIDAQFKDSGSDQIQ 177

Query: 185 --RERLMTAKKQLEGIVRKKLSSAVDQRDHNAILRFVRLYTPLGLEEEGLQVYVGYLKKV 242
             RERL+  KKQLEGIVRKKLSS+VDQRDH AILRFVRLYTPLGLEEEGLQVYVGYLKKV
Sbjct: 178 IQRERLLEVKKQLEGIVRKKLSSSVDQRDHPAILRFVRLYTPLGLEEEGLQVYVGYLKKV 237

Query: 243 IGMRSRMEFEQLVESMEHSNS--NVNFVSCLTSLFKDIVLAIEENSEILSGLCGEDGIVY 300
           IGMRSRMEFEQLVES+  +N   +VNFV+CLTSLFKDIVLAIEENSEILSGLCGEDGIVY
Sbjct: 238 IGMRSRMEFEQLVESISMANEQRSVNFVACLTSLFKDIVLAIEENSEILSGLCGEDGIVY 297

Query: 301 AICELQEECDSRGSVILNKYMEYRKLSKLSSEINARNNTMLAVGGGTEGPDPREVEMYLE 360
           AICELQEECDSRGSVILNKYMEYRKL++LSSEIN RNN +LAVGG +EGPDPREVE+YLE
Sbjct: 298 AICELQEECDSRGSVILNKYMEYRKLAQLSSEINGRNNNLLAVGGVSEGPDPREVELYLE 357

Query: 361 EILQLMQLGEDYTEFMVSKIRGLASVDPELLPRATKAFRSGSFSKVVQDVTGFYVILEGF 420
           EIL LMQLGEDYTEFM+SKI+ L SVDPELLPRATK+FRSGSFSKVVQD+TGFYVILEGF
Sbjct: 358 EILSLMQLGEDYTEFMISKIKALTSVDPELLPRATKSFRSGSFSKVVQDLTGFYVILEGF 417

Query: 421 FMVENVRKAIGIDELVPHSLTTSMVDDGF 449
           FMVENVRKAI IDE  P SLTTSMVDD F
Sbjct: 418 FMVENVRKAIRIDEHDPDSLTTSMVDDVF 446


>Medtr0014s0110.1 | hypothetical protein | LC |
           scaffold0014:70584-73156 | 20130731
          Length = 157

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 58/123 (47%), Gaps = 23/123 (18%)

Query: 322 EYRKLSKLSSEINARNNTMLAV--GGGTEGPDPREVEMYLEEILQLMQLGEDYTEFMVS- 378
           E R+L+ L  + N    T   V    G  G DP  +  +L +   L  +GE  + F+   
Sbjct: 21  EMRELNNLDGKKNEEEITRYHVRDWIGILGVDPNIIADHLVQFTHLAGVGEVKSSFLQLI 80

Query: 379 --------------------KIRGLASVDPELLPRATKAFRSGSFSKVVQDVTGFYVILE 418
                               K   + SVD  L+PRATKAFR GSFSKVVQD++ F VILE
Sbjct: 81  WLLCSWCLKFKAALTLTLDLKWLHVCSVDLGLIPRATKAFRGGSFSKVVQDLSLFDVILE 140

Query: 419 GFF 421
           G F
Sbjct: 141 GIF 143