Miyakogusa Predicted Gene

Lj5g3v0380030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0380030.1 tr|F2DS31|F2DS31_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,33.73,3e-18,seg,NULL;
BACTERIOCHLOROPHYLL SYNTHASE,NULL; PRENYLTRANSFERASES,NULL; UbiA,UbiA
prenyltransferase fa,CUFF.52894.1
         (245 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054305.1 | homogentisate phytyltransferase | HC | chr1:23...   309   2e-84
Medtr4g127800.3 | homogentisate phytyltransferase | HC | chr4:53...    73   2e-13
Medtr4g127800.1 | homogentisate phytyltransferase | HC | chr4:53...    73   2e-13
Medtr4g127800.2 | homogentisate phytyltransferase | HC | chr4:53...    73   2e-13

>Medtr1g054305.1 | homogentisate phytyltransferase | HC |
           chr1:23377123-23369732 | 20130731
          Length = 392

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/237 (71%), Positives = 177/237 (74%), Gaps = 9/237 (3%)

Query: 17  IIPTWNS--LHSVKLP-----TNPNSS-RFILAGFSNHLTSTRRSCCNPVPKRHKIPISI 68
           IIPTWNS   +S K P     T P SS RF   G  +H   T  S     PKR   PISI
Sbjct: 16  IIPTWNSKNYYSFKPPISAKSTTPKSSKRFGSIGLHHH-HHTSFSAHVSKPKRQCKPISI 74

Query: 69  RASTEVGAAGSDRPFGNKVLDLKDACWRFLRPHTIRGTALGSFALVARALVENSNLIKWS 128
           RA +EVGAAGSDRPF +KVLD KDA WRFLRPHTIRGTALGSFALV+RAL+ENSNLIKWS
Sbjct: 75  RACSEVGAAGSDRPFADKVLDFKDAFWRFLRPHTIRGTALGSFALVSRALIENSNLIKWS 134

Query: 129 LVFKALSGLFALICGNGYIVGINQIYDISIDKVNKPYLPIAAGDLSVSSAWLLVIFFAAA 188
           L+ KALSGLFALICGNGYIVGINQIYDI IDKVNKPYLPIAAGDLSV SAW LVIFFAAA
Sbjct: 135 LLLKALSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWYLVIFFAAA 194

Query: 189 GLLIVGLNFGPXXXXXXXXXXXXXXXXXVPPFRMKRFPVAAFLIIATVRGFLPNFGV 245
           GLL VGLNFG                  VPP RMKRFPVAAFLIIATVRGFL NFGV
Sbjct: 195 GLLTVGLNFGSFIFSLYSFGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGV 251


>Medtr4g127800.3 | homogentisate phytyltransferase | HC |
           chr4:53138714-53131274 | 20130731
          Length = 411

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 15/155 (9%)

Query: 92  DACWRFLRPHTIRGTALGSFALVARALVENSNLIKWSLVF--KALSGLFALICGNGYIVG 149
           DA +RF RPHT+ GTAL   ++++ +L+    L   S +F    L  + A +  N YIVG
Sbjct: 116 DAFYRFSRPHTVIGTAL---SIISVSLLAAEKLSDISPLFFTGVLEAVVAALFMNIYIVG 172

Query: 150 INQIYDISIDKVNKPYLPIAAGDLSVSSAWLLVIFFAAAGLL------IVGLNFGPXXXX 203
           +NQ+ D+ IDK+NKPYLP+A+G+ S ++  ++V+   ++ +L      IVG ++      
Sbjct: 173 LNQLSDVEIDKINKPYLPLASGEYSFATGAIIVV---SSSILSFWLAWIVG-SWPLFWAL 228

Query: 204 XXXXXXXXXXXXXVPPFRMKRFPVAAFLIIATVRG 238
                        VP  R KRF V A + I +VR 
Sbjct: 229 FISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRA 263


>Medtr4g127800.1 | homogentisate phytyltransferase | HC |
           chr4:53139111-53131266 | 20130731
          Length = 411

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 15/155 (9%)

Query: 92  DACWRFLRPHTIRGTALGSFALVARALVENSNLIKWSLVF--KALSGLFALICGNGYIVG 149
           DA +RF RPHT+ GTAL   ++++ +L+    L   S +F    L  + A +  N YIVG
Sbjct: 116 DAFYRFSRPHTVIGTAL---SIISVSLLAAEKLSDISPLFFTGVLEAVVAALFMNIYIVG 172

Query: 150 INQIYDISIDKVNKPYLPIAAGDLSVSSAWLLVIFFAAAGLL------IVGLNFGPXXXX 203
           +NQ+ D+ IDK+NKPYLP+A+G+ S ++  ++V+   ++ +L      IVG ++      
Sbjct: 173 LNQLSDVEIDKINKPYLPLASGEYSFATGAIIVV---SSSILSFWLAWIVG-SWPLFWAL 228

Query: 204 XXXXXXXXXXXXXVPPFRMKRFPVAAFLIIATVRG 238
                        VP  R KRF V A + I +VR 
Sbjct: 229 FISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRA 263


>Medtr4g127800.2 | homogentisate phytyltransferase | HC |
           chr4:53138796-53131274 | 20130731
          Length = 411

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 15/155 (9%)

Query: 92  DACWRFLRPHTIRGTALGSFALVARALVENSNLIKWSLVF--KALSGLFALICGNGYIVG 149
           DA +RF RPHT+ GTAL   ++++ +L+    L   S +F    L  + A +  N YIVG
Sbjct: 116 DAFYRFSRPHTVIGTAL---SIISVSLLAAEKLSDISPLFFTGVLEAVVAALFMNIYIVG 172

Query: 150 INQIYDISIDKVNKPYLPIAAGDLSVSSAWLLVIFFAAAGLL------IVGLNFGPXXXX 203
           +NQ+ D+ IDK+NKPYLP+A+G+ S ++  ++V+   ++ +L      IVG ++      
Sbjct: 173 LNQLSDVEIDKINKPYLPLASGEYSFATGAIIVV---SSSILSFWLAWIVG-SWPLFWAL 228

Query: 204 XXXXXXXXXXXXXVPPFRMKRFPVAAFLIIATVRG 238
                        VP  R KRF V A + I +VR 
Sbjct: 229 FISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRA 263