Miyakogusa Predicted Gene
- Lj5g3v0348750.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0348750.2 tr|D2A4K5|D2A4K5_TRICA Egalitarian OS=Tribolium
castaneum GN=egl PE=4 SV=1,32.54,9e-19,DNA_pol_A_exo1,3'-5'
exonuclease domain; KH_1,K Homology domain, type 1; no
description,NULL; seg,NU,CUFF.52893.2
(332 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g016970.1 | 3'-5' exonuclease | HC | chr1:4575701-4582988 ... 511 e-145
Medtr1g016970.3 | 3'-5' exonuclease | HC | chr1:4575701-4582988 ... 511 e-145
Medtr1g016970.5 | 3'-5' exonuclease | HC | chr1:4575701-4582988 ... 487 e-138
Medtr1g016970.2 | 3'-5' exonuclease | HC | chr1:4575701-4581849 ... 415 e-116
Medtr1g016970.4 | 3'-5' exonuclease | HC | chr1:4575701-4581844 ... 257 1e-68
Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-3352415... 55 1e-07
Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-3352172... 55 1e-07
Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-3352415... 55 1e-07
Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC | chr4:1... 50 2e-06
Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC | chr4:1... 50 3e-06
>Medtr1g016970.1 | 3'-5' exonuclease | HC | chr1:4575701-4582988 |
20130731
Length = 352
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/311 (78%), Positives = 276/311 (88%), Gaps = 7/311 (2%)
Query: 14 YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
+ TH+P P EKV +++E RVPIH+VT ASQLPV+FLEPSP K+VIGFDCE VDLC
Sbjct: 22 FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80
Query: 70 RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81 RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140
Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
IKLNNVVDTQIAYSL+EEQEG++ D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200
Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260
Query: 248 ADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCNAEIQIG 307
ADWPSLPPIPD+LK DGNGPEEEILSVLD+P GKMGC+IGKKGA+I+ IKESCNAEI IG
Sbjct: 261 ADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESCNAEILIG 320
Query: 308 GAKGPPDKVCI 318
G +GP DKV I
Sbjct: 321 GPRGPADKVFI 331
>Medtr1g016970.3 | 3'-5' exonuclease | HC | chr1:4575701-4582988 |
20130731
Length = 352
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/311 (78%), Positives = 276/311 (88%), Gaps = 7/311 (2%)
Query: 14 YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
+ TH+P P EKV +++E RVPIH+VT ASQLPV+FLEPSP K+VIGFDCE VDLC
Sbjct: 22 FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80
Query: 70 RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81 RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140
Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
IKLNNVVDTQIAYSL+EEQEG++ D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200
Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260
Query: 248 ADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCNAEIQIG 307
ADWPSLPPIPD+LK DGNGPEEEILSVLD+P GKMGC+IGKKGA+I+ IKESCNAEI IG
Sbjct: 261 ADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESCNAEILIG 320
Query: 308 GAKGPPDKVCI 318
G +GP DKV I
Sbjct: 321 GPRGPADKVFI 331
>Medtr1g016970.5 | 3'-5' exonuclease | HC | chr1:4575701-4582988 |
20130731
Length = 314
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/294 (78%), Positives = 262/294 (89%), Gaps = 7/294 (2%)
Query: 14 YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
+ TH+P P EKV +++E RVPIH+VT ASQLPV+FLEPSP K+VIGFDCE VDLC
Sbjct: 22 FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80
Query: 70 RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81 RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140
Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
IKLNNVVDTQIAYSL+EEQEG++ D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200
Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260
Query: 248 ADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCN 301
ADWPSLPPIPD+LK DGNGPEEEILSVLD+P GKMGC+IGKKGA+I+ IKESC
Sbjct: 261 ADWPSLPPIPDELKVDGNGPEEEILSVLDVPPGKMGCIIGKKGASIMSIKESCK 314
>Medtr1g016970.2 | 3'-5' exonuclease | HC | chr1:4575701-4581849 |
20130731
Length = 290
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/258 (77%), Positives = 224/258 (86%), Gaps = 7/258 (2%)
Query: 14 YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
+ TH+P P EKV +++E RVPIH+VT ASQLPV+FLEPSP K+VIGFDCE VDLC
Sbjct: 22 FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80
Query: 70 RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81 RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140
Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDP 187
IKLNNVVDTQIAYSL+EEQEG++ D+YIS VGLLADPRYCG S ++KEEVRVLLRQDP
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGLSNVDKEEVRVLLRQDP 200
Query: 188 KFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNDY 247
FW YRPLSE M+ +AADDVRFLLYIYHQMM KL ERSLW LAVRGALYCRCFCVN+N+Y
Sbjct: 201 NFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWLLAVRGALYCRCFCVNNNNY 260
Query: 248 ADWPSLPPIPDKLKADGN 265
ADWPSLPPIP D N
Sbjct: 261 ADWPSLPPIPGHQNLDDN 278
>Medtr1g016970.4 | 3'-5' exonuclease | HC | chr1:4575701-4581844 |
20130731
Length = 217
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 125/165 (75%), Positives = 145/165 (87%), Gaps = 7/165 (4%)
Query: 14 YFTHIP----HPGEKVLDDDESRVPIHIVTAASQLPVEFLEPSPEKKLVIGFDCEGVDLC 69
+ TH+P P EKV +++E RVPIH+VT ASQLPV+FLEPSP K+VIGFDCE VDLC
Sbjct: 22 FITHLPIAPSSPSEKV-EEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCEAVDLC 80
Query: 70 RNGELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFG 129
R+G LCI+QLAFPDAIYLVDAI+GG VL++ACKPALESD++TKVIHDCKRDSEALYFQFG
Sbjct: 81 RDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEALYFQFG 140
Query: 130 IKLNNVVDTQIAYSLIEEQEGRKT--DEYISFVGLLADPRYCGTS 172
IKLNNVVDTQIAYSL+EEQEG++ D+YIS VGLLADPRYCG +
Sbjct: 141 IKLNNVVDTQIAYSLLEEQEGQRRLPDDYISLVGLLADPRYCGIN 185
>Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-33524154 |
20130731
Length = 598
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 65 GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
VDL N G C+MQ++ ++VD ++ D + + + KV+H
Sbjct: 232 AVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGAD 291
Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEE 178
RD L FGI + N+ DT A +++ + F G+ A+ Y
Sbjct: 292 RDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNAD------ 345
Query: 179 VRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERS 225
W+ RPL ++M++ +D +LLYIY M KL E S
Sbjct: 346 -----------WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 381
>Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-33521721 |
20130731
Length = 438
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 65 GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
VDL N G C+MQ++ ++VD ++ D + + + KV+H
Sbjct: 232 AVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGAD 291
Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEE 178
RD L FGI + N+ DT A +++ + F G+ A+ Y
Sbjct: 292 RDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNAD------ 345
Query: 179 VRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERS 225
W+ RPL ++M++ +D +LLYIY M KL E S
Sbjct: 346 -----------WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 381
>Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-33524154 |
20130731
Length = 693
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 65 GVDLCRN------GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCK 118
VDL N G C+MQ++ ++VD ++ D + + + KV+H
Sbjct: 232 AVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGAD 291
Query: 119 RDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEE 178
RD L FGI + N+ DT A +++ + F G+ A+ Y
Sbjct: 292 RDIVWLQRDFGIYICNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNAD------ 345
Query: 179 VRVLLRQDPKFWKYRPLSELMVRTAADDVRFLLYIYHQMMEKLNERS 225
W+ RPL ++M++ +D +LLYIY M KL E S
Sbjct: 346 -----------WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 381
>Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC |
chr4:17080472-17072108 | 20130731
Length = 908
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 72 GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFGIK 131
G ++Q++ YL+D I D M+ +P I KV H D L F I
Sbjct: 150 GFTGLVQISTQQEDYLIDTIALHDS-MEILRPVFADPSICKVFHGADNDVLWLQRDFHIY 208
Query: 132 LNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDPKFWK 191
+ N+ DT A ++ + + S LL YCG + ++L R+D W+
Sbjct: 209 VVNLFDTSKACEVLSKPQK-------SLAYLLET--YCGVN-----TNKLLQRED---WR 251
Query: 192 YRPLSELMVRTAADDVRFLLYIYHQMMEKLNE 223
RPLS MV A D +LLYI + ++++L +
Sbjct: 252 QRPLSAEMVHYARTDAHYLLYIANCLIDELKQ 283
>Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC |
chr4:17080440-17072522 | 20130731
Length = 930
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 72 GELCIMQLAFPDAIYLVDAIQGGDVLMQACKPALESDHITKVIHDCKRDSEALYFQFGIK 131
G ++Q++ YL+D I D M+ +P I KV H D L F I
Sbjct: 150 GFTGLVQISTQQEDYLIDTIALHDS-MEILRPVFADPSICKVFHGADNDVLWLQRDFHIY 208
Query: 132 LNNVVDTQIAYSLIEEQEGRKTDEYISFVGLLADPRYCGTSYLEKEEVRVLLRQDPKFWK 191
+ N+ DT A ++ + + S LL YCG + ++L R+D W+
Sbjct: 209 VVNLFDTSKACEVLSKPQK-------SLAYLLET--YCGVN-----TNKLLQRED---WR 251
Query: 192 YRPLSELMVRTAADDVRFLLYIYHQMMEKLNE 223
RPLS MV A D +LLYI + ++++L +
Sbjct: 252 QRPLSAEMVHYARTDAHYLLYIANCLIDELKQ 283