Miyakogusa Predicted Gene

Lj5g3v0322430.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0322430.1 Non Characterized Hit- tr|I1MXF9|I1MXF9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,78.25,0,FF,FF domain;
WW,WW/Rsp5/WWP; coiled-coil,NULL; FF domain,FF domain; WW
domain,WW/Rsp5/WWP; seg,NULL,CUFF.52864.1
         (999 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g017520.1 | pre-mRNA-processing 40A-like protein | HC | ch...  1140   0.0  
Medtr1g106025.1 | pre-mRNA-processing 40A-like protein | HC | ch...   575   e-164
Medtr4g074440.1 | pre-mRNA-processing protein 40C | HC | chr4:28...   102   2e-21
Medtr4g074440.2 | pre-mRNA-processing protein 40C | HC | chr4:28...    62   2e-09

>Medtr1g017520.1 | pre-mRNA-processing 40A-like protein | HC |
            chr1:4919114-4935894 | 20130731
          Length = 1048

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/953 (61%), Positives = 644/953 (67%), Gaps = 11/953 (1%)

Query: 34   HAGHAIASSNVGMPVVXXXXXXXXXXXXXLAPRPIQPGHPASSSQSMPMPYIQ-NRPLTS 92
            HAGHA+ SSNVGMP +             LAPR IQPGHP SSSQ +PMPYIQ NRPLTS
Sbjct: 77   HAGHAVPSSNVGMPAIQGQQLQYSQQMQQLAPRQIQPGHPVSSSQGIPMPYIQTNRPLTS 136

Query: 93   FPPHSQQTVPHPSNHMPGLPVSGAPTHSSYTFTPSYGQQQNNANALVQYQHPPHTHAPPA 152
             P H+QQ VPH +NHMPGLPVSGAP  S YTFTPSYGQQQ+NANAL QYQHPP  HAPPA
Sbjct: 137  VPQHAQQAVPHINNHMPGLPVSGAPPQSLYTFTPSYGQQQDNANALPQYQHPPQMHAPPA 196

Query: 153  GQPWLXXXXXXXXXXXXXXXXGVQPSGTTSTDAATPATNQSSASDWQEHTSADGRRYYYN 212
            GQPWL                GVQ SGT STDAAT  T+ +SASDWQEHT+ DGRRYYYN
Sbjct: 197  GQPWLSSVPKSAAAVTSVQPSGVQSSGTASTDAATNTTSNNSASDWQEHTAGDGRRYYYN 256

Query: 213  KRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGRKYYYNKVTQQSTWSIPEELKLARE 272
            K TRQSSWEKPLELMSP+ERADASTVWKEFTSS+GRKYYYNKVTQQS W+IPEELKLARE
Sbjct: 257  KSTRQSSWEKPLELMSPLERADASTVWKEFTSSEGRKYYYNKVTQQSVWTIPEELKLARE 316

Query: 273  QAHREMNQGMQSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPVTPIAATDQ 332
            QAH+ ++QGM SE                                   PS VTP+ ATD 
Sbjct: 317  QAHKTISQGMVSETSDTSNAAASSAATSTPPANAASSNTLTPNGLASSPSSVTPVVATDN 376

Query: 333  QLLVSG--------SIVTSNPTGVEPSNVATMSTVPTTVAGSSEVAAKLLDSKMPSIIEN 384
            Q  VSG        S+VTS+ TGVEPS V T+ST PT VAGS  V A  LDSK+ SI+EN
Sbjct: 377  QRPVSGLSVASVSHSVVTSSTTGVEPSTVVTVSTAPTAVAGSLGVVANSLDSKINSIVEN 436

Query: 385  QASQD-LGSVNGASLQDVEEAKRGLPVVGKVNITPPEEKTNDDETLVYANKQEAKNAFKA 443
            QA+ D   SVNG  LQD+EEAK+G+PVVG+ N+TP EEKTND ET VYANK EAKNAFKA
Sbjct: 437  QATHDSTSSVNGTPLQDMEEAKKGVPVVGQTNVTPSEEKTNDGETFVYANKLEAKNAFKA 496

Query: 444  FLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKR 503
             LESVNV SDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERR+KQK+
Sbjct: 497  LLESVNVHSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRIKQKK 556

Query: 504  AREEFTKMLEDCKELTSSTRWSKAIIMFENDERFNAVERPRDRADLFESYLVXXXXXXXX 563
            AREEFTKMLE+CKELTSSTRWSKAI M ENDERFNAVER RDR DLFESY+V        
Sbjct: 557  AREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKE 616

Query: 564  XXXXXXXXNIAEYRKFLESCDYVKVNSQWRKIQXXXXXXXXXXXXXXXXXXXVYQDYIRD 623
                    N+AEYRKFLESCD+VKVNS WRKIQ                   V+QDYIRD
Sbjct: 617  NAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRYSLLEKIDRLLVFQDYIRD 676

Query: 624  LEKEEEEQKRIHKDRVRRGERKNRDAFRKLLEEHVAAGVLTGRTQWREYCLKVRDLPQYQ 683
            LEKEEEEQKRI K+RVRRGERKNRDAFRKLLEEH+A GVLT +TQWR+YCLKV++LPQYQ
Sbjct: 677  LEKEEEEQKRIQKERVRRGERKNRDAFRKLLEEHIADGVLTAKTQWRDYCLKVKELPQYQ 736

Query: 684  AVASNTSGSTPKDLFEDVAEDLEKQYHEDKILIKDIIKSGKXXXXXXSVFEDFKLAVLEE 743
            AVASNTSGSTPKDLFEDV E+LEKQYHEDK LIKDI+KSGK      SVFEDFK AV EE
Sbjct: 737  AVASNTSGSTPKDLFEDVFENLEKQYHEDKTLIKDILKSGKITVATTSVFEDFKSAVSEE 796

Query: 744  AACQRISEINXXXXXXXXXXXXXXXXXXXXXXXXXXXDDFTNLLYTFKEITITSKWEDCK 803
            A C+ ISEIN                           DDFTNLLYT K+I  +S WE+CK
Sbjct: 797  ATCKTISEINLKLLFEELLERAKEKEEKEAKKRQRLADDFTNLLYTLKDIITSSTWEECK 856

Query: 804  PLFEETQEYRSIGDESYSREIFEEYITYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 863
             LFE+TQEY SIG+ESYS+EIFEEYITYL                               
Sbjct: 857  ALFEDTQEYISIGNESYSKEIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEK 916

Query: 864  XXXXXXXXXXXXXXXXXXXXXXTDSDNEDITDSHGYXXXXXXXXXXXXX-XXXXQXXXXX 922
                                  +DSDN+D+TD HGY                  Q     
Sbjct: 917  EKKEKEREREKEKSKERHKKDESDSDNQDMTDGHGYREEKKKEKDKERKHRRRHQSSMDD 976

Query: 923  XXXXXXXXXXXXXXXXHGSDRKKSRKHANSPESDNESRHKRHKREHWDGSRRT 975
                            HGSDRKKSRKHANSPESDNESRHKRHKR+H DGSRR+
Sbjct: 977  VDSEKDEKEESRKSRRHGSDRKKSRKHANSPESDNESRHKRHKRDHGDGSRRS 1029


>Medtr1g106025.1 | pre-mRNA-processing 40A-like protein | HC |
           chr1:47946865-47960298 | 20130731
          Length = 1008

 Score =  575 bits (1483), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 353/782 (45%), Positives = 449/782 (57%), Gaps = 41/782 (5%)

Query: 77  SQSMPMPYIQNRPLTSFPPHSQQTVPHPSNHMPG--LPVSGAP----THSSYTFTPSYGQ 130
           SQ +PMP     P  +    S+  +P P +  P    P  G P    + S    + SYGQ
Sbjct: 95  SQMIPMPV----PRPNMQTSSESMMPQPDSQAPNGYTPGLGGPGMSISSSFMFASSSYGQ 150

Query: 131 Q-QNNANALVQYQHPPHTHAPPAGQPWLXXXXXXXXXXXXXXXXGVQPSGTTSTDAAT-- 187
             QNN N+  QYQ  P    PP G                    G QP+ TT   +AT  
Sbjct: 151 APQNNFNSTGQYQPVPQIQ-PPTG-----SSSQSITPGTAPQSNGEQPTVTTVMPSATII 204

Query: 188 -PATNQSSASDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSD 246
            P   + S+SDW EHTSA GRR+YYNKRT+ SSWEKP ELM+PIER DAST WKE+TS D
Sbjct: 205 QPHLAKGSSSDWIEHTSATGRRFYYNKRTKLSSWEKPFELMTPIERVDASTNWKEYTSPD 264

Query: 247 GRKYYYNKVTQQSTWSIPEELKLAREQAHREMNQGMQSEXXXXXXXXXXXXXXXXXXXXX 306
           GRKYYYNK+T++S W IPEELK AREQ  + M  G   E                     
Sbjct: 265 GRKYYYNKITKESKWLIPEELKFAREQVGKAMVNGTLPEPLLTPCTQPSANSVTEAMPSA 324

Query: 307 XXXXXXXXXXXXXXPSPVTPIAATD----QQLLVSGSIVTSNPTGV--------EPSNVA 354
                         P  V P+  T     Q  + SGS    +PT +        EP    
Sbjct: 325 DNSSVPAQGEQTS-PISVAPVVTTSPSNLQSEITSGS--RDSPTAITITGTEVDEPEVPV 381

Query: 355 TMSTVPTTVAGSSEVAAKLLDSKMPSI--IENQASQD-LGSVNGASLQDVEEAKRGLPVV 411
            + T   +  GS +     +++    +  + N ++QD +GS +G   +D E+ K  +  +
Sbjct: 382 NIITPSDSSLGSDKAFVSDINTAATPMNDVSNVSAQDTVGSADGVLGEDKEDGK--IDSI 439

Query: 412 GK-VNITPPEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRYN 470
           G+ VN    E K+ + E+ VYANK EAK+AFKA LESVNV SDW WE+AMR IINDKRY 
Sbjct: 440 GENVNDVASETKSVEPESFVYANKMEAKDAFKALLESVNVGSDWNWERAMRLIINDKRYG 499

Query: 471 ALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEDCKELTSSTRWSKAIIM 530
           ALK+LGERKQAFNEYL QRKK EAEE+RMK K+ARE+F KMLE+  ELTSS R+SKAI +
Sbjct: 500 ALKSLGERKQAFNEYLSQRKKQEAEEKRMKHKKAREDFRKMLEESTELTSSIRYSKAIAI 559

Query: 531 FENDERFNAVERPRDRADLFESYLVXXXXXXXXXXXXXXXXNIAEYRKFLESCDYVKVNS 590
           FEND+RF AVER RDR D+ ES+L                 N  EYRKFLESCD++K N+
Sbjct: 560 FENDDRFKAVERERDRKDMIESFLEELLNKERAKVLEERKRNTVEYRKFLESCDFIKANT 619

Query: 591 QWRKIQXXXXXXXXXXXXXXXXXXXVYQDYIRDLEKEEEEQKRIHKDRVRRGERKNRDAF 650
           Q+RK+Q                   ++QDY+RDLEKEEEEQK+I K+ +R+ ERKNRD F
Sbjct: 620 QYRKVQDRLEADERCSQLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEF 679

Query: 651 RKLLEEHVAAGVLTGRTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYH 710
           RKL++EH  +G+LT +T WR+Y  +V+DLP Y AVASNTSGSTPK+LFEDV E+LEKQY 
Sbjct: 680 RKLMDEHSTSGILTAKTHWRDYHSQVKDLPAYLAVASNTSGSTPKELFEDVVEELEKQYQ 739

Query: 711 EDKILIKDIIKSGKXXXXXXSVFEDFKLAVLEEAACQRISEINXXXXXXXXXXXXXXXXX 770
           E+K  IKD +KS K        FEDFK A+ E  +   IS+ N                 
Sbjct: 740 EEKSQIKDAVKSAKITLSSTWTFEDFKSALSEHISSPPISDSNLKLVFDEVLERAREKEE 799

Query: 771 XXXXXXXXXXDDFTNLLYTFKEITITSKWEDCKPLFEETQEYRSIGDESYSREIFEEYIT 830
                     D F +LLY+ K+IT +SKWED + L E++QE+RS+GD S S+++FE Y+ 
Sbjct: 800 KEAKKRKRLADAFFHLLYSTKDITESSKWEDFRQLLEDSQEFRSVGDVSLSKQMFEVYVA 859

Query: 831 YL 832
            L
Sbjct: 860 QL 861


>Medtr4g074440.1 | pre-mRNA-processing protein 40C | HC |
           chr4:28340546-28354758 | 20130731
          Length = 959

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 130/601 (21%), Positives = 230/601 (38%), Gaps = 115/601 (19%)

Query: 186 ATPATNQSSASD----WQEHTSADGRRYYYNKRTRQSSWEKPLELM----------SPIE 231
           AT   N+ +A+D    W  H +  G  YYYN  T QS+++KP              +P+ 
Sbjct: 321 ATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQSTYDKPAGFKGEAHQVSVQPTPVS 380

Query: 232 RAD-ASTVWKEFTSSDGRKYYYNKVTQQSTWSIPEELKLAREQAHREMNQGMQSEXXXXX 290
             D   T W+  ++SDG+KYYYN  T+ S W IP E+   +++   ++ +          
Sbjct: 381 MVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDSDVTKDHP------- 433

Query: 291 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPVTPIAATDQQLLVSGSIVTSNPTGVEP 350
                                             TP+  T+        +V  N   +  
Sbjct: 434 ----------------------------------TPVPNTNVLSERGSGMVALNAPAITT 459

Query: 351 SNVATMSTVPTTVAGSSE----VAAKLLDSKMP---SIIENQASQDLGSVNGA------- 396
                +++ P  V  S      +  KL +S  P   S I   + Q     NG+       
Sbjct: 460 GGRDAVASKPFIVQSSPSALDLIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTA 519

Query: 397 -SLQDVEEAKRGLPVVGKVNITPPEEKTNDDETLVYANKQEAKNAFKAFLESVNVQSDWT 455
            SLQ+     +     G  N++     + D+++    +K+E  N FK  L+   V     
Sbjct: 520 KSLQNDNSKDKQKDANGDANVSDTSSDSEDEDS--GPSKEECINQFKEMLKERGVAPFSK 577

Query: 456 WEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKML--- 512
           WE+ + +I+ D R+ A+ +   R+  F  Y+  R + E +E+R  QK A E F ++L   
Sbjct: 578 WEKELPKIVFDPRFKAIPSYSARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEA 637

Query: 513 -EDCKELTSSTRWSKAIIMFENDERFNAVERPRDRADLFESYLVXXXXXXXXXXXXXXXX 571
            ED  + T S  + K    + ND RF A++R ++R  L    ++                
Sbjct: 638 SEDIDDKTDSHTFRKK---WGNDPRFEALDR-KEREHLLNERVLPLKKATEEKAQAMRDA 693

Query: 572 NIAEYRKFLESCDYVKVNSQWRKIQXXXXXXXXXXXXXXXXXXXVYQDYIRDLE------ 625
               ++  L+    +  NS+W +++                   ++ +YI +L+      
Sbjct: 694 AADSFKSMLKEQGEITFNSRWSRVKESLRDDPRYKSVKHEDRELLFNEYISELKAVEHAA 753

Query: 626 KEEEEQKRIHKD---------------------RVRRGERKNR--DAFRKLLEEHVAAGV 662
           + E   KR  +D                     RVR   R+     +F+ LL E +   +
Sbjct: 754 ERETRAKREEQDKLRERERELRKRKEREEHEMERVRLKIRRKEAVTSFQALLVERIKDPM 813

Query: 663 LTGRTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHED-KILIKDIIK 721
            +    W E   K+   PQ +A  S+   +  + LF D  + L+++   D + L+ + + 
Sbjct: 814 AS----WTESKPKLEKDPQGRATNSDLDSADMEKLFRDHVKMLQERRARDFRALLAEFLT 869

Query: 722 S 722
           S
Sbjct: 870 S 870


>Medtr4g074440.2 | pre-mRNA-processing protein 40C | HC |
           chr4:28340546-28354758 | 20130731
          Length = 711

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 13/183 (7%)

Query: 368 EVAAKLLDSKMPSIIENQASQDLGS----VNGASLQDVEEAKRGLPVVGKVNITPPEEKT 423
           E  A +  S +P+      S+  GS        SLQ+     +     G  N++     +
Sbjct: 488 ESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGDANVSDTSSDS 547

Query: 424 NDDETLVYANKQEAKNAFKAFLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFN 483
            D+++    +K+E  N FK  L+   V     WE+ + +I+ D R+ A+ +   R+  F 
Sbjct: 548 EDEDS--GPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFE 605

Query: 484 EYLGQRKKLEAEERRMKQKRAREEFTKML----EDCKELTSSTRWSKAIIMFENDERFNA 539
            Y+  R + E +E+R  QK A E F ++L    ED  + T S  + K    + ND RF A
Sbjct: 606 HYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKK---WGNDPRFEA 662

Query: 540 VER 542
           ++R
Sbjct: 663 LDR 665



 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 15/97 (15%)

Query: 186 ATPATNQSSASD----WQEHTSADGRRYYYNKRTRQSSWEKPLELM----------SPIE 231
           AT   N+ +A+D    W  H +  G  YYYN  T QS+++KP              +P+ 
Sbjct: 321 ATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQSTYDKPAGFKGEAHQVSVQPTPVS 380

Query: 232 RAD-ASTVWKEFTSSDGRKYYYNKVTQQSTWSIPEEL 267
             D   T W+  ++SDG+KYYYN  T+ S W IP E+
Sbjct: 381 MVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEV 417