Miyakogusa Predicted Gene

Lj5g3v0310140.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0310140.4 tr|G7ICD6|G7ICD6_MEDTR Sigma factor sigB
regulation protein rsbQ OS=Medicago truncatula
GN=MTR_1g018,78.49,0,SIGMA FACTOR SIGB REGULATION PROTEIN RSBQ,NULL;
ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN,NULL; a,CUFF.52840.4
         (268 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein...   433   e-122
Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein...   312   2e-85
Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein...   310   1e-84
Medtr6g086560.1 | sigma factor sigb regulation protein rsbq prot...   233   1e-61
Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein...   220   1e-57
Medtr1239s0010.1 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hyd...    57   3e-08

>Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr1:5202292-5203901 | 20130731
          Length = 268

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/255 (79%), Positives = 232/255 (90%), Gaps = 1/255 (0%)

Query: 2   ATSILDVHNVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTINPD 61
           +TSILD  NV VEGSG++YIVF HG GTD+S W+R+LPYF  +YKVIL+DLV AG++NPD
Sbjct: 3   STSILDALNVRVEGSGDKYIVFAHGFGTDQSAWQRVLPYFTRSYKVILYDLVCAGSVNPD 62

Query: 62  YFDFRRYSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGA 121
           YFD+RRY+TLD YVDDLL ILD+L VTRCA+VGHS+SA IG+LASIRRP+LFSKLILIGA
Sbjct: 63  YFDYRRYTTLDAYVDDLLNILDSLHVTRCAYVGHSISAMIGMLASIRRPELFSKLILIGA 122

Query: 122 SPRFLND-ESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPEAVQEFSRTLFN 180
           SPRFLND E+Y GGFE  EIE+VFSAMEANY+AWV G+APL VGADVP AV+EFSRTLFN
Sbjct: 123 SPRFLNDGENYHGGFEQGEIEQVFSAMEANYEAWVNGFAPLAVGADVPTAVREFSRTLFN 182

Query: 181 MRPDITLFVSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEW 240
           MRPDI+LFVSRTVFNSDLRGILGLVKVPCCIMQTA+D+SVPA  A YM+EHLGGK+TV+W
Sbjct: 183 MRPDISLFVSRTVFNSDLRGILGLVKVPCCIMQTARDMSVPATVATYMKEHLGGKSTVQW 242

Query: 241 LNTEGHLPHLSAPTY 255
           L+TEGHLPHLSAP+Y
Sbjct: 243 LDTEGHLPHLSAPSY 257


>Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr4:39713387-39710926 | 20130731
          Length = 270

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 188/248 (75%), Gaps = 1/248 (0%)

Query: 7   DVHNVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTINPDYFDFR 66
           + HNV V GSG+ +IV  HG GTD+SVWK ++P+    ++VIL+D + AGT NPDYFDF 
Sbjct: 6   EAHNVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPDYFDFE 65

Query: 67  RYSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASPRFL 126
           RYSTL+ Y  DLLAIL+ LRV  C FVGHS+SA IG +ASI RP LF+K+ILI ASPR+L
Sbjct: 66  RYSTLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISASPRYL 125

Query: 127 NDESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPE-AVQEFSRTLFNMRPDI 185
           ND  Y GGFE  +++++F AM +NY++W  G+AP+ VG D+   AVQEFSRTLFNMRPDI
Sbjct: 126 NDRDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFNMRPDI 185

Query: 186 TLFVSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWLNTEG 245
            L V +T+F SD+R IL +V VPC I+Q+ KDL+VP   A Y+ +H+G ++ VE ++TEG
Sbjct: 186 ALSVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEVMSTEG 245

Query: 246 HLPHLSAP 253
           HLP LS+P
Sbjct: 246 HLPQLSSP 253


>Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr5:5736714-5740149 | 20130731
          Length = 305

 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 141/248 (56%), Positives = 186/248 (75%), Gaps = 1/248 (0%)

Query: 7   DVHNVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTINPDYFDFR 66
           + HNV V G+GN YIV  HG GTD+SVWK  +PY   +++V+L+D + AGT NP+YFD  
Sbjct: 6   EAHNVKVLGTGNRYIVLAHGFGTDQSVWKHFVPYLVDDFRVVLYDNMGAGTTNPEYFDSE 65

Query: 67  RYSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASPRFL 126
           R+S+L+ Y  DLLAIL+ L++  C FVGHS+SA IG +ASI RP LF KLI++ +SPR+L
Sbjct: 66  RHSSLEGYAYDLLAILEELQIDSCIFVGHSVSAMIGAIASITRPDLFLKLIMVSSSPRYL 125

Query: 127 NDESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPE-AVQEFSRTLFNMRPDI 185
           ND +Y GGFE  ++ ++F+AM  NY+AW  G+APL VG D+   AVQEFSRTLFNMRPDI
Sbjct: 126 NDVNYFGGFEQEDLNQLFNAMAENYKAWCYGFAPLAVGGDMDSVAVQEFSRTLFNMRPDI 185

Query: 186 TLFVSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWLNTEG 245
            L VSRT+F SD+R IL LV VPC I+Q  KD++VP   + Y+ +HLGG++ VE + T+G
Sbjct: 186 ALIVSRTIFQSDMRQILNLVTVPCHIIQAEKDMAVPVMVSEYLHQHLGGQSIVEVMTTDG 245

Query: 246 HLPHLSAP 253
           HLP LS+P
Sbjct: 246 HLPQLSSP 253


>Medtr6g086560.1 | sigma factor sigb regulation protein rsbq
           protein, putative | HC | chr6:32152457-32148021 |
           20130731
          Length = 284

 Score =  233 bits (595), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 165/246 (67%), Gaps = 2/246 (0%)

Query: 10  NVSVEGSGNEYIVFGHGLGTDKSVWKRILPYF-EPNYKVILFDLVFAGTI-NPDYFDFRR 67
           N    G+G E IVF HG GTD+S+W +I PYF E NY+V+LFD  F+G I + + ++  +
Sbjct: 22  NARTLGTGTETIVFAHGYGTDQSIWDKITPYFTEKNYRVVLFDWPFSGAIKDQNLYNPSK 81

Query: 68  YSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASPRFLN 127
           YS+LD + DDL+++LD + +    FVGHSMS  I  LASI+RPQLF +LIL+GASPR++N
Sbjct: 82  YSSLDAFADDLISLLDQMELKVVTFVGHSMSGMISCLASIKRPQLFKRLILVGASPRYIN 141

Query: 128 DESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPEAVQEFSRTLFNMRPDITL 187
            + Y GGF  ++I+ +   +E+NY+ WV  ++  +V  +   +V +F   L  MR ++ L
Sbjct: 142 TDDYEGGFTSSDIDNLLKNIESNYENWVSYFSTNVVDPNDEPSVIKFRECLNKMRNEVPL 201

Query: 188 FVSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWLNTEGHL 247
            +++TVF  D R IL  V+ PC I+QT+ D+ VP + A YM++ + GK T+E ++T GH 
Sbjct: 202 SLAKTVFCHDYRDILEKVETPCTIIQTSSDMVVPYSVALYMEKKIKGKVTLEVIDTFGHF 261

Query: 248 PHLSAP 253
           P L+AP
Sbjct: 262 PQLTAP 267


>Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr3:14783516-14781798 | 20130731
          Length = 269

 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 162/244 (66%), Gaps = 1/244 (0%)

Query: 10  NVSVEGSGNEYIVFGHGLGTDKSVWKRILPYFEPNYKVILFDLVFAGTI-NPDYFDFRRY 68
           N    GSG E IV  HG GTD+S W +I+P    NY ++LFD  F+G I +   ++  +Y
Sbjct: 13  NARTIGSGPETIVLCHGFGTDQSTWNKIVPLLAENYSLVLFDWPFSGAITDKSLYNHAKY 72

Query: 69  STLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIGASPRFLND 128
           ++ +PY D+L+ ++D L +    FVGHSM+A IG +ASI++P+LF +++L+ ASPR++N 
Sbjct: 73  NSYEPYADELITLMDELDLKCITFVGHSMAAMIGCIASIKKPELFKRIVLLCASPRYINT 132

Query: 129 ESYRGGFELNEIEEVFSAMEANYQAWVRGYAPLMVGADVPEAVQEFSRTLFNMRPDITLF 188
           + Y GGFE ++IE + S +E+ Y++WV  Y P+ V  +  ++V +F + L  M  ++ + 
Sbjct: 133 DDYEGGFERSDIENLISTIESQYESWVSAYGPIAVDPNDADSVDKFQKCLKRMGGEVAIT 192

Query: 189 VSRTVFNSDLRGILGLVKVPCCIMQTAKDLSVPAAAARYMQEHLGGKTTVEWLNTEGHLP 248
           +++TVF SD R ++  V +PC I+Q++ D++VP +   Y+ E++ G +T+E+++  GH P
Sbjct: 193 LAKTVFFSDYRDMVEKVVIPCTIIQSSNDVAVPISIGHYLDENIKGVSTLEFIDMTGHCP 252

Query: 249 HLSA 252
            L+A
Sbjct: 253 QLTA 256


>Medtr1239s0010.1 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
           hydrolase, putative | LC | scaffold1239:34-1801 |
           20130731
          Length = 560

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 9/119 (7%)

Query: 6   LDVHNVSVEGSGNEYIVFGHGLGTDKSVW---KRILPYFEPNYKVILFDLV-FAGTINPD 61
           LD+H     GSG++ +V  HG G   S W   +R +     +++V+  D+  F  +  P+
Sbjct: 303 LDIH-YHDSGSGDQVVVLLHGGGPGASSWSNFQRNIGPLSEHFRVLAIDMPHFGKSTKPE 361

Query: 62  YFDFRRYSTLDPYVDDLLAILDALRVTRCAFVGHSMSATIGILASIRRPQLFSKLILIG 120
                RY     Y + + A LD L +++  FVG+S+  ++ ++ S+ RP++  +L+L+G
Sbjct: 362 ----GRYLDRPWYAEVVGATLDTLNISKAHFVGNSLGGSVSMVLSVERPEIVDRLVLMG 416