Miyakogusa Predicted Gene

Lj5g3v0309100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0309100.1 tr|Q2MGQ9|Q2MGQ9_MEDTR 14 kDa zinc-binding
protein OS=Medicago truncatula GN=MTR_4g084190 PE=2
SV=1,82.42,0,HISTRIAD,Histidine triad (HIT) protein; no
description,HIT-like domain; seg,NULL; HIT_1,Histidine
tr,NODE_45436_length_646_cov_53.476780.path2.1
         (162 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g084190.1 | scavenger mRNA decapping enzyme carboxy-term-b...   251   3e-67
Medtr4g084190.2 | scavenger mRNA decapping enzyme carboxy-term-b...   244   3e-65
Medtr6g026810.1 | scavenger mRNA decapping enzyme carboxy-term-b...   195   1e-50
Medtr4g084190.3 | scavenger mRNA decapping enzyme carboxy-term-b...   134   5e-32
Medtr7g088160.2 | scavenger mRNA decapping enzyme carboxy-term-b...    78   3e-15
Medtr7g088160.1 | scavenger mRNA decapping enzyme carboxy-term-b...    78   3e-15
Medtr7g053220.1 | histidine triad nucleotide-binding protein | H...    50   7e-07

>Medtr4g084190.1 | scavenger mRNA decapping enzyme
           carboxy-term-binding protein | HC |
           chr4:32811793-32814077 | 20130731
          Length = 182

 Score =  251 bits (640), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 131/165 (79%), Gaps = 3/165 (1%)

Query: 1   MSQRAFVIKANILGVSKFV---QCRRFPFSTXXXXXXXXXXXXXXXXXDSGAPTIFDKII 57
           +S RAFV+KAN    S  V   QCRR PFS                  DSGAPTIFDKII
Sbjct: 18  VSTRAFVVKANNFNFSNSVLPIQCRRLPFSASATNNEQAAAKAAAVNADSGAPTIFDKII 77

Query: 58  NKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAKAEARHGEILGQLLYAA 117
           NKEIPSS+VYEDEKVLAFRDI+P+APVHVL+IPKFRDGLTEL KA+ARHGEILGQLLYAA
Sbjct: 78  NKEIPSSIVYEDEKVLAFRDISPQAPVHVLVIPKFRDGLTELGKADARHGEILGQLLYAA 137

Query: 118 KIVAEKEGILDGFRVVINSGPAGCQSVYHLHLHVLGGRQMKWPPG 162
           KIVAEKEGI DGFRVVINSG + CQSVYHLHLHVLGGRQM WPPG
Sbjct: 138 KIVAEKEGIADGFRVVINSGASACQSVYHLHLHVLGGRQMNWPPG 182


>Medtr4g084190.2 | scavenger mRNA decapping enzyme
           carboxy-term-binding protein | HC |
           chr4:32811793-32814077 | 20130731
          Length = 190

 Score =  244 bits (622), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/173 (71%), Positives = 131/173 (75%), Gaps = 11/173 (6%)

Query: 1   MSQRAFVIKANILGVSKFV---QCRRFPFSTXXXXXXXXXXXXXXXXXDSGAPTIFDKII 57
           +S RAFV+KAN    S  V   QCRR PFS                  DSGAPTIFDKII
Sbjct: 18  VSTRAFVVKANNFNFSNSVLPIQCRRLPFSASATNNEQAAAKAAAVNADSGAPTIFDKII 77

Query: 58  NKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAK--------AEARHGEI 109
           NKEIPSS+VYEDEKVLAFRDI+P+APVHVL+IPKFRDGLTEL K        A+ARHGEI
Sbjct: 78  NKEIPSSIVYEDEKVLAFRDISPQAPVHVLVIPKFRDGLTELGKVANHLVLYADARHGEI 137

Query: 110 LGQLLYAAKIVAEKEGILDGFRVVINSGPAGCQSVYHLHLHVLGGRQMKWPPG 162
           LGQLLYAAKIVAEKEGI DGFRVVINSG + CQSVYHLHLHVLGGRQM WPPG
Sbjct: 138 LGQLLYAAKIVAEKEGIADGFRVVINSGASACQSVYHLHLHVLGGRQMNWPPG 190


>Medtr6g026810.1 | scavenger mRNA decapping enzyme
           carboxy-term-binding protein | HC | chr6:9052613-9055956
           | 20130731
          Length = 153

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 105/117 (89%)

Query: 46  DSGAPTIFDKIINKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAKAEAR 105
           D+ +PTIFDKIINKEIPS+VVYED+KVLAFRDI P+ PVH+L+IPK RDGLT ++KAE R
Sbjct: 37  DADSPTIFDKIINKEIPSTVVYEDDKVLAFRDIQPQGPVHILLIPKVRDGLTGISKAEER 96

Query: 106 HGEILGQLLYAAKIVAEKEGILDGFRVVINSGPAGCQSVYHLHLHVLGGRQMKWPPG 162
           H +ILG+LLY AK+VA++EG+ DG+RVVIN GP GCQSVYH+H+HV+GGRQM WPPG
Sbjct: 97  HIDILGRLLYTAKLVAKQEGLDDGYRVVINDGPKGCQSVYHIHVHVIGGRQMNWPPG 153


>Medtr4g084190.3 | scavenger mRNA decapping enzyme
           carboxy-term-binding protein | HC |
           chr4:32811793-32813601 | 20130731
          Length = 131

 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 74/104 (71%), Gaps = 3/104 (2%)

Query: 1   MSQRAFVIKANILGVSKFV---QCRRFPFSTXXXXXXXXXXXXXXXXXDSGAPTIFDKII 57
           +S RAFV+KAN    S  V   QCRR PFS                  DSGAPTIFDKII
Sbjct: 18  VSTRAFVVKANNFNFSNSVLPIQCRRLPFSASATNNEQAAAKAAAVNADSGAPTIFDKII 77

Query: 58  NKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAK 101
           NKEIPSS+VYEDEKVLAFRDI+P+APVHVL+IPKFRDGLTEL K
Sbjct: 78  NKEIPSSIVYEDEKVLAFRDISPQAPVHVLVIPKFRDGLTELGK 121


>Medtr7g088160.2 | scavenger mRNA decapping enzyme
           carboxy-term-binding protein | HC |
           chr7:34308144-34313976 | 20130731
          Length = 389

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 46  DSGAPTIFDK-IINKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAKAE 103
           +S  PT+FD+ II +E PS+V YED++VLAFRDI PEAP H++IIPK R+GLT L+KA+
Sbjct: 17  ESDPPTMFDRSIIKRENPSTVFYEDDEVLAFRDIAPEAPPHIIIIPKSRNGLTGLSKAQ 75


>Medtr7g088160.1 | scavenger mRNA decapping enzyme
           carboxy-term-binding protein | HC |
           chr7:34308144-34313891 | 20130731
          Length = 389

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 46  DSGAPTIFDK-IINKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAKAE 103
           +S  PT+FD+ II +E PS+V YED++VLAFRDI PEAP H++IIPK R+GLT L+KA+
Sbjct: 17  ESDPPTMFDRSIIKRENPSTVFYEDDEVLAFRDIAPEAPPHIIIIPKSRNGLTGLSKAQ 75


>Medtr7g053220.1 | histidine triad nucleotide-binding protein | HC |
           chr7:18713828-18718572 | 20130731
          Length = 203

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 46  DSGAPTIFDKIINKEIPSSVVYEDEKVLAFRDINPEAPVHVLIIPKFRDGLTELAKAEAR 105
           D+    +F  I+  + P+  +YED+  L   D NP +  H LIIPK     +     +A 
Sbjct: 42  DNNQNCVFCNIVRGQSPALKLYEDDMCLCILDTNPLSHGHSLIIPK-----SHYPSLDAT 96

Query: 106 HGEILGQLLYAAKIVAE---KEGILDGFRVVINSGPAGCQSVYHLHLHVL 152
              ++  +      ++    K    + F V+IN+G A  Q ++H H+H++
Sbjct: 97  PPSVVAAMSSKVPFISNAIMKATGCNSFNVLINNGAAAGQVIFHTHMHII 146