Miyakogusa Predicted Gene

Lj5g3v0308500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308500.1 tr|I3S194|I3S194_LOTJA 40S ribosomal protein S24
OS=Lotus japonicus PE=2 SV=1,96.35,0,Ribosomal proteins S24e, L23 and
L15e,Ribosomal protein L23/L15e core domain; 40S RIBOSOMAL PROTEIN
,CUFF.52826.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g081410.1 | 40S ribosomal protein S24-2 | HC | chr1:362215...   243   5e-65
Medtr7g114640.1 | 40S ribosomal protein S24-2 | HC | chr7:473395...   207   2e-54

>Medtr1g081410.1 | 40S ribosomal protein S24-2 | HC |
           chr1:36221581-36224014 | 20130731
          Length = 137

 Score =  243 bits (619), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/122 (95%), Positives = 122/122 (100%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKEKLAR+YDVKDPNTVFVF
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVF 60

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
           KFRTHFGGGKSTGFGLIYDS+ENAKKYEPKYRL+RNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 61  KFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIR 120

Query: 121 GV 122
           GV
Sbjct: 121 GV 122


>Medtr7g114640.1 | 40S ribosomal protein S24-2 | HC |
           chr7:47339591-47334643 | 20130731
          Length = 136

 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/122 (83%), Positives = 113/122 (92%), Gaps = 1/122 (0%)

Query: 1   MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVF 60
           MADKAVTIRTRKF+TNRLLSRKQF+V+  HPG+ NVSK+ELKEKLA +Y  KD NTVFVF
Sbjct: 1   MADKAVTIRTRKFLTNRLLSRKQFVVEANHPGKPNVSKSELKEKLATMYGAKD-NTVFVF 59

Query: 61  KFRTHFGGGKSTGFGLIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIR 120
             +T+FGGGKSTGFGLIYDS++NAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIR
Sbjct: 60  GLQTNFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIR 119

Query: 121 GV 122
           GV
Sbjct: 120 GV 121