Miyakogusa Predicted Gene

Lj5g3v0308440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308440.1 Non Characterized Hit- tr|C0P9J5|C0P9J5_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,46.83,1e-18,Acyl-CoA
binding protein,Acyl-CoA-binding protein, ACBP; ACBP,Acyl-CoA-binding
protein, ACBP; seg,NU,CUFF.52795.1
         (308 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g418545.1 | acyl-CoA-binding domain protein | HC | chr1:53...   194   1e-49
Medtr3g491870.1 | acyl-CoA-binding domain protein | HC | chr3:41...    99   5e-21
Medtr7g113200.1 | acyl-CoA-binding domain protein | HC | chr7:46...    56   5e-08
Medtr7g113200.2 | acyl-CoA-binding domain protein | HC | chr7:46...    55   8e-08

>Medtr1g418545.1 | acyl-CoA-binding domain protein | HC |
           chr1:5360731-5364929 | 20130731
          Length = 321

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/289 (43%), Positives = 153/289 (52%), Gaps = 28/289 (9%)

Query: 41  HHYHEEEPAGPVLQEDRL-TVQTESKVGFINPVQV--ATNVE---KTGHELVEEDTDLTV 94
           HH H + P GPVLQ+  + T QTES+VGFI PVQV  ATN+E    T    V   +++  
Sbjct: 40  HHVHHQ-PVGPVLQQFTVQTSQTESRVGFIKPVQVSTATNIETEHNTTDATVVSSSNVAA 98

Query: 95  ES---GSDSAVG----------LTXXXXXXXXXXXXXXXXXXXXSAETAVPXXXXXXXXX 141
           ES    SD AV           +                       E ++          
Sbjct: 99  ESPPTNSDVAVADAEVEYGSNFVEETVTKGDDSVQQRNEECVEEIMEESLTEKEDEEKSD 158

Query: 142 XXXXXXXXXRSELEELFMAATGFVARNXXXXXXXXXXXXXSDVQMELYGLHKVATEGPCR 201
                    RSE+E++FM AT +V                 D++MELYGLHKVA EGPC 
Sbjct: 159 EEWEWEGIERSEVEKMFMTATEYVGEKGYIGNCD------GDLEMELYGLHKVAMEGPCC 212

Query: 202 ESQPMPLMLSARAKWNAWQKLGNMSPEVAMERYISLLSDKFPGWMKDSSAGT--GXXXXX 259
           ESQPMPL L+ARAKWNAWQKLGNMSPEVAMERYISLLSDK PGWMKD+SAG         
Sbjct: 213 ESQPMPLKLAARAKWNAWQKLGNMSPEVAMERYISLLSDKVPGWMKDTSAGMTEAEPIGS 272

Query: 260 XXXXXXXXXXXTSLPHQQMMVTDRELELESGAQDHSPLTESDLENKVKK 308
                      ++L  Q +++T+REL  ES AQ+  P TESDLEN VKK
Sbjct: 273 EVSESAAPDLSSALSRQPIILTERELVQESSAQEPIPHTESDLENNVKK 321


>Medtr3g491870.1 | acyl-CoA-binding domain protein | HC |
           chr3:41844067-41838580 | 20130731
          Length = 357

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 54/65 (83%)

Query: 182 SDVQMELYGLHKVATEGPCRESQPMPLMLSARAKWNAWQKLGNMSPEVAMERYISLLSDK 241
           +DVQ++LYGL+K+ATEGPC  +QP PL ++ARAKW AWQKLG M PE AM++YI ++S+ 
Sbjct: 132 NDVQLQLYGLYKIATEGPCSTAQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVSEL 191

Query: 242 FPGWM 246
           +P W+
Sbjct: 192 YPTWL 196


>Medtr7g113200.1 | acyl-CoA-binding domain protein | HC |
           chr7:46610120-46600028 | 20130731
          Length = 664

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 188 LYGLHKVATEGPCRESQPMPLMLSARAKWNAWQKLGNMSPEVAMERYISLLSDKFPGWMK 247
           LY L++ A+ GPC   +P    +   +KW +W +LGNMS   AM  ++ +L ++ PGW  
Sbjct: 49  LYSLYQQASVGPCNIPEPSSWKIVEHSKWASWNQLGNMSSTEAMRLFVKILEEEDPGWYS 108

Query: 248 DSS 250
            +S
Sbjct: 109 RAS 111


>Medtr7g113200.2 | acyl-CoA-binding domain protein | HC |
           chr7:46610109-46603244 | 20130731
          Length = 478

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 188 LYGLHKVATEGPCRESQPMPLMLSARAKWNAWQKLGNMSPEVAMERYISLLSDKFPGWMK 247
           LY L++ A+ GPC   +P    +   +KW +W +LGNMS   AM  ++ +L ++ PGW  
Sbjct: 49  LYSLYQQASVGPCNIPEPSSWKIVEHSKWASWNQLGNMSSTEAMRLFVKILEEEDPGWYS 108

Query: 248 DSS 250
            +S
Sbjct: 109 RAS 111