Miyakogusa Predicted Gene

Lj5g3v0308350.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0308350.1 Non Characterized Hit- tr|Q9C9P6|Q9C9P6_ARATH
Putative ribosomal protein S9; 44165-44563 OS=Arabidop,51.89,4e-19,no
description,Ribosomal protein S5 domain 2-type fold, subgroup;
seg,NULL; Ribosomal protein S5 dom,CUFF.52794.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g021760.1 | 30S ribosomal protein S9P | HC | chr1:6582496-...   108   8e-25

>Medtr1g021760.1 | 30S ribosomal protein S9P | HC |
           chr1:6582496-6580128 | 20130731
          Length = 205

 Score =  108 bits (271), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 66/90 (73%), Gaps = 6/90 (6%)

Query: 24  NPQTLTYARTTQPLSLSRVPKTPSLTVSA---AAPVEPETENPMKYVKSRLPGGVAAQTT 80
            P TL+  RT    SLSR PK  SLTV+A   A+P EPE  +   YVKSRLPGG AAQT 
Sbjct: 24  KPTTLSLPRT---FSLSRSPKFHSLTVTATTLASPAEPEIADLKTYVKSRLPGGFAAQTI 80

Query: 81  IGTGRRKSAIARVVLQEGTGKFIINYRDAK 110
           IGTGRRK+AIARVVLQEGTGK  INYRDAK
Sbjct: 81  IGTGRRKTAIARVVLQEGTGKIFINYRDAK 110