Miyakogusa Predicted Gene

Lj5g3v0292810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0292810.1 Non Characterized Hit- tr|I3SY08|I3SY08_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,100,9.94922e-44,LSM,Ribonucleoprotein LSM domain; no
description,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL; SMALL
NUC,CUFF.52751.1
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g128050.1 | small nuclear ribonucleoprotein | HC | chr4:53...   153   4e-38
Medtr4g080300.1 | u6 snRNA-associated-like-Smprotein | HC | chr4...    74   4e-14
Medtr7g114670.1 | small nuclear ribonucleoprotein | LC | chr7:47...    71   3e-13

>Medtr4g128050.1 | small nuclear ribonucleoprotein | HC |
          chr4:53295698-53293100 | 20130731
          Length = 88

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 75/76 (98%)

Query: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
          MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEG FTGNL
Sbjct: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNL 60

Query: 61 GEILIRCNNVLYLRGV 76
          GEILIRCNNVLY+RGV
Sbjct: 61 GEILIRCNNVLYMRGV 76


>Medtr4g080300.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr4:31139467-31146120 | 20130731
          Length = 91

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
          P  FL ++ G+PV+VKL  G++Y+G L  +D YMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 68 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80


>Medtr7g114670.1 | small nuclear ribonucleoprotein | LC |
          chr7:47349276-47349910 | 20130731
          Length = 75

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 40/54 (74%)

Query: 2  ATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQ 55
          A +  +P PFLN LTGKPV+VKLKW M YK YLVS+DS MNL LANT+   + Q
Sbjct: 3  AVVVDHPNPFLNKLTGKPVLVKLKWEMGYKSYLVSLDSCMNLLLANTKGLFDSQ 56