Miyakogusa Predicted Gene

Lj5g3v0292780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0292780.1 Non Characterized Hit- tr|B9SHT1|B9SHT1_RICCO
Putative uncharacterized protein OS=Ricinus communis G,48.57,6e-18,
,CUFF.52746.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g018930.1 | hypothetical protein | HC | chr1:5577520-55813...   254   3e-68

>Medtr1g018930.1 | hypothetical protein | HC | chr1:5577520-5581331
           | 20130731
          Length = 160

 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 139/164 (84%), Gaps = 9/164 (5%)

Query: 5   METEASQVTVASSPGGHDEGAVRDLLTLARQLINQGKPSQALQAVIVAMKNRGGDEAVFQ 64
           METEAS      S G +D  AVRDLLTLARQ INQGKPSQALQAV+VA+KN+GGDEAVFQ
Sbjct: 6   METEAS------SSGQND--AVRDLLTLARQFINQGKPSQALQAVVVAVKNKGGDEAVFQ 57

Query: 65  SLHRARELYRGRLQENAAVDQLASLFAECAIAEAQPGMMEPSANSNISSQPVTPDVHGSS 124
           SL RARE YR RLQ+NAA DQLASLFAECAIAE QP M+EPSA +NIS+  VT D +G+S
Sbjct: 58  SLSRAREQYRSRLQQNAAADQLASLFAECAIAEVQPAMVEPSA-TNISNPSVTTDANGTS 116

Query: 125 ILAESGRMQVVLDAVSDGSSFICLKCGGLVSNHRKDEHYAYWCC 168
           ILAESGR QVVLDAVSDGSSFICLKCGGLVSN R+DEHY YWCC
Sbjct: 117 ILAESGRTQVVLDAVSDGSSFICLKCGGLVSNTRRDEHYTYWCC 160