Miyakogusa Predicted Gene

Lj5g3v0290440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0290440.1 Non Characterized Hit- tr|K4BUX7|K4BUX7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,67.14,6e-19,Glycosyl hydrolase domain,NULL; Alpha-amylase
C-terminal beta-sheet dom,Alpha-amylase, C-terminal be,CUFF.52732.1
         (73 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g019480.1 | alpha amylase domain protein | HC | chr1:58847...   122   5e-29
Medtr1g019440.1 | alpha amylase domain protein | HC | chr1:58706...   109   6e-25
Medtr8g468990.1 | alpha amylase domain protein | HC | chr8:25017...    55   2e-08
Medtr8g468990.3 | alpha amylase domain protein | HC | chr8:25017...    55   2e-08

>Medtr1g019480.1 | alpha amylase domain protein | HC |
           chr1:5884776-5886764 | 20130731
          Length = 402

 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 62/73 (84%)

Query: 1   MEPIKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPPNVQV 60
           MEPIKKLT IRKRNGI  TS VNILAAE DLYMA I NKII KIGPK DLGNLLPPN QV
Sbjct: 330 MEPIKKLTAIRKRNGITATSNVNILAAENDLYMANIGNKIIVKIGPKLDLGNLLPPNAQV 389

Query: 61  ATSGQDYAVWERK 73
           ATSGQDYAVWE K
Sbjct: 390 ATSGQDYAVWEIK 402


>Medtr1g019440.1 | alpha amylase domain protein | HC |
           chr1:5870673-5873171 | 20130731
          Length = 421

 Score =  109 bits (272), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query: 2   EPIKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPPNVQVA 61
           + I KLT IR+RNGI   STVNILAA+ADLY+A+IDNKII KIGP+ DLGNL+P N  VA
Sbjct: 352 DQIAKLTAIRQRNGINMKSTVNILAADADLYVAKIDNKIIVKIGPRMDLGNLIPSNFHVA 411

Query: 62  TSGQDYAVWE 71
           TSGQDYAVWE
Sbjct: 412 TSGQDYAVWE 421


>Medtr8g468990.1 | alpha amylase domain protein | HC |
           chr8:25017934-25009440 | 20130731
          Length = 913

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 8/72 (11%)

Query: 4   IKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPPN----VQ 59
           I  L  IRKRNGI   STV I  +E D+Y A ID K+  KIGP    G+  PP+     +
Sbjct: 842 IGALLSIRKRNGINCRSTVKITKSERDVYAAIIDEKVAMKIGP----GHYEPPSDSQKWK 897

Query: 60  VATSGQDYAVWE 71
            A  G+DY +WE
Sbjct: 898 SAWDGRDYNIWE 909


>Medtr8g468990.3 | alpha amylase domain protein | HC |
           chr8:25017230-25009440 | 20130731
          Length = 764

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 8/72 (11%)

Query: 4   IKKLTEIRKRNGIKPTSTVNILAAEADLYMAEIDNKIITKIGPKQDLGNLLPPN----VQ 59
           I  L  IRKRNGI   STV I  +E D+Y A ID K+  KIGP    G+  PP+     +
Sbjct: 693 IGALLSIRKRNGINCRSTVKITKSERDVYAAIIDEKVAMKIGP----GHYEPPSDSQKWK 748

Query: 60  VATSGQDYAVWE 71
            A  G+DY +WE
Sbjct: 749 SAWDGRDYNIWE 760