Miyakogusa Predicted Gene

Lj5g3v0276960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0276960.1 Non Characterized Hit- tr|I3SNK2|I3SNK2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; seg,NULL; no
description,Nucleic a,CUFF.52693.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g090635.1 | nucleic acid-binding, OB-fold-like protein | H...   221   2e-58
Medtr2g014360.1 | nucleic acid-binding, OB-fold-like protein | H...   177   2e-45
Medtr8g064590.2 | nucleic acid-binding, OB-fold-like protein | H...   171   2e-43
Medtr8g064590.1 | nucleic acid-binding, OB-fold-like protein | H...   171   2e-43
Medtr5g034290.1 | nucleic acid-binding, OB-fold-like protein | H...   170   5e-43
Medtr5g034290.2 | nucleic acid-binding, OB-fold-like protein | H...   170   5e-43
Medtr6g060020.1 | nucleic acid-binding, OB-fold-like protein | H...   117   2e-27
Medtr2g090640.1 | DUF4283 domain protein | LC | chr2:38791614-38...    86   1e-17
Medtr5g083900.1 | nucleic acid-binding, OB-fold-like protein, pu...    75   2e-14
Medtr5g083870.1 | nucleic acid-binding, OB-fold-like protein | L...    71   3e-13

>Medtr2g090635.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr2:38787156-38789810 | 20130731
          Length = 140

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 118/140 (84%)

Query: 1   MATQIEKRKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAEC 60
           MATQ  KRKPVFVKVDQLKPGTNGHTLT             NR GR +V+A++P RIAEC
Sbjct: 1   MATQTAKRKPVFVKVDQLKPGTNGHTLTVKVVNSSPVKTIPNRGGRSAVIASRPSRIAEC 60

Query: 61  VVGDETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFE 120
           V+GDET +I+FTARNEQVDLM P +T+ILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFE
Sbjct: 61  VIGDETASIIFTARNEQVDLMNPGATLILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFE 120

Query: 121 VKEENNLSLVEYELVNVADE 140
           V+E+NNLSLVEYELVNV +E
Sbjct: 121 VREDNNLSLVEYELVNVVEE 140


>Medtr2g014360.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr2:4084047-4086138 | 20130731
          Length = 152

 Score =  177 bits (450), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 105/142 (73%), Gaps = 4/142 (2%)

Query: 2   ATQIEKRKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLA---AKPPRIA 58
            T+  KRKP F KVDQ+KPGTNGHTL             G    RPS  +    +P  I+
Sbjct: 12  GTKPAKRKPTFTKVDQMKPGTNGHTLIAKVLTSETVLQKGGGT-RPSSSSRGIVRPTLIS 70

Query: 59  ECVVGDETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPAN 118
           EC++GDETGTI+FTARNEQV+LM   +T+I+RN+KIDMFKGSMRLAVD+WGRIEVT+PA 
Sbjct: 71  ECLIGDETGTIIFTARNEQVELMKAGNTVIIRNSKIDMFKGSMRLAVDKWGRIEVTDPAE 130

Query: 119 FEVKEENNLSLVEYELVNVADE 140
           F VKE+NNLSL+EYELVN  +E
Sbjct: 131 FVVKEDNNLSLIEYELVNAVEE 152


>Medtr8g064590.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr8:27116410-27113210 | 20130731
          Length = 136

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 100/132 (75%), Gaps = 4/132 (3%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKP F KV+QL+PGT+GHTLT            G    RP     +  RIAE +VGDETG
Sbjct: 9   RKPTFTKVEQLRPGTSGHTLTVKVVNTKMVMQKG----RPDGPQPRQMRIAESLVGDETG 64

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKEENNL 127
            I+FTARN+QVDL+   STIILRNAKIDMFKGSMRLAVD+WGR+EVT+PA+F VKE+NNL
Sbjct: 65  MIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTVKEDNNL 124

Query: 128 SLVEYELVNVAD 139
           SL+EYELVNV +
Sbjct: 125 SLIEYELVNVVE 136


>Medtr8g064590.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr8:27116409-27113327 | 20130731
          Length = 136

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 100/132 (75%), Gaps = 4/132 (3%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKP F KV+QL+PGT+GHTLT            G    RP     +  RIAE +VGDETG
Sbjct: 9   RKPTFTKVEQLRPGTSGHTLTVKVVNTKMVMQKG----RPDGPQPRQMRIAESLVGDETG 64

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKEENNL 127
            I+FTARN+QVDL+   STIILRNAKIDMFKGSMRLAVD+WGR+EVT+PA+F VKE+NNL
Sbjct: 65  MIIFTARNDQVDLLKDGSTIILRNAKIDMFKGSMRLAVDKWGRVEVTDPADFTVKEDNNL 124

Query: 128 SLVEYELVNVAD 139
           SL+EYELVNV +
Sbjct: 125 SLIEYELVNVVE 136


>Medtr5g034290.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr5:14839397-14843757 | 20130731
          Length = 168

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 98/129 (75%), Gaps = 4/129 (3%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKPVF KVDQL PGT GHT+              ++  RP  L  +  R+AEC+VGDETG
Sbjct: 42  RKPVFCKVDQLLPGTRGHTIIVKVVSVKLV----DQNDRPDGLKLRHMRMAECLVGDETG 97

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKEENNL 127
           TI+FTAR+EQVDLMT  STII+RNAKIDMFKG+MRL VD WGRIE+TEPA F VKE+NNL
Sbjct: 98  TIIFTARHEQVDLMTEGSTIIVRNAKIDMFKGTMRLGVDVWGRIELTEPAAFTVKEDNNL 157

Query: 128 SLVEYELVN 136
           SL+EYELVN
Sbjct: 158 SLIEYELVN 166


>Medtr5g034290.2 | nucleic acid-binding, OB-fold-like protein | HC |
           chr5:14840270-14843747 | 20130731
          Length = 135

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 98/129 (75%), Gaps = 4/129 (3%)

Query: 8   RKPVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETG 67
           RKPVF KVDQL PGT GHT+              ++  RP  L  +  R+AEC+VGDETG
Sbjct: 9   RKPVFCKVDQLLPGTRGHTIIVKVVSVKLV----DQNDRPDGLKLRHMRMAECLVGDETG 64

Query: 68  TIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKEENNL 127
           TI+FTAR+EQVDLMT  STII+RNAKIDMFKG+MRL VD WGRIE+TEPA F VKE+NNL
Sbjct: 65  TIIFTARHEQVDLMTEGSTIIVRNAKIDMFKGTMRLGVDVWGRIELTEPAAFTVKEDNNL 124

Query: 128 SLVEYELVN 136
           SL+EYELVN
Sbjct: 125 SLIEYELVN 133


>Medtr6g060020.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr6:20603676-20603377 | 20130731
          Length = 99

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 72/87 (82%), Gaps = 2/87 (2%)

Query: 55  PR--IAECVVGDETGTIVFTARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIE 112
           PR  +A  +VGDET  I+FTARN++V+L+   STIILRNAKID+FKGSM L VD+WGR+E
Sbjct: 13  PRQMLAGSLVGDETRMIIFTARNDKVNLLKDGSTIILRNAKIDIFKGSMWLVVDKWGRVE 72

Query: 113 VTEPANFEVKEENNLSLVEYELVNVAD 139
           VT+  NF VK++NNLSL+EYELVNV +
Sbjct: 73  VTDLTNFTVKDDNNLSLIEYELVNVVE 99


>Medtr2g090640.1 | DUF4283 domain protein | LC |
           chr2:38791614-38794576 | 20130731
          Length = 543

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/81 (56%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 57  IAECVVGDETGTIVF----TARNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIE 112
           IAEC+VGDETGTI+F    T  +  +DL+ P +T+ LRNAKI++F   MRLAVD  G I+
Sbjct: 456 IAECLVGDETGTIIFRGQQTGYDFLLDLVKPGATLSLRNAKINLFWEHMRLAVDWRGCIQ 515

Query: 113 VTEPANFEVKEENNLSLVEYE 133
           +TEPA+FEV+E+NNLS  +Y+
Sbjct: 516 LTEPASFEVREDNNLSEDKYD 536


>Medtr5g083900.1 | nucleic acid-binding, OB-fold-like protein,
           putative | LC | chr5:36203859-36205701 | 20130731
          Length = 229

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 13/129 (10%)

Query: 10  PVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVGDETGTI 69
           P+F KV  L+P      +T            G+              + E +VGDETG I
Sbjct: 111 PLFTKVQDLRPEMENINITLKVVNVKKVSSKGHM------------PVTESLVGDETGII 158

Query: 70  VFTARN-EQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVKEENNLS 128
           +  A   ++++ +   STI+L  AKI M++GSMRL V R   IE   PA F +KE+ NLS
Sbjct: 159 ILRAVGADKINRVKEGSTIVLHKAKIIMYRGSMRLGVCRAEDIEEAPPAAFTIKEDCNLS 218

Query: 129 LVEYELVNV 137
           L+EYE + V
Sbjct: 219 LIEYERIQV 227


>Medtr5g083870.1 | nucleic acid-binding, OB-fold-like protein | LC |
           chr5:36194915-36195298 | 20130731
          Length = 127

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 17/133 (12%)

Query: 10  PVFVKVDQLKPGTNGHTLTXXXXXXXXXXXXGNRVGRPSVLAAKPPRIAECVVG---DET 66
           PVF+KV  L+P      LT            G          + P  + E +VG   DET
Sbjct: 5   PVFIKVHDLRPEMEDVNLTLKVLNVKDVSRKG----------SMP--VTESLVGVEYDET 52

Query: 67  GTIVFTA-RNEQVDLMTPDSTIILRNAKIDMFKGSMRLAVDRWGRI-EVTEPANFEVKEE 124
           G I+F A   ++++ +   STI++R A+I M+KGSMRL+V R   I E  EPA+F VKE+
Sbjct: 53  GIIIFRAIGGDKINRVKEGSTIVVRKARILMYKGSMRLSVRRAEDIVEAPEPASFIVKED 112

Query: 125 NNLSLVEYELVNV 137
            N SL+E+E V V
Sbjct: 113 CNWSLIEFERVQV 125