Miyakogusa Predicted Gene

Lj5g3v0238160.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0238160.2 Non Characterized Hit- tr|I1MY40|I1MY40_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,68.54,0,seg,NULL;
Conserved domain common to transcription factors TFIIS, elongin A,
CRSP70,Transcription fa,CUFF.52669.2
         (1074 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g025500.1 | transcription elongation factor (TFIIS) family...  1269   0.0  
Medtr6g007787.1 | BAH domain; TFIIS helical bundle-like domain p...    74   9e-13
Medtr6g007787.2 | BAH domain; TFIIS helical bundle-like domain p...    74   9e-13

>Medtr1g025500.1 | transcription elongation factor (TFIIS) family
            protein, putative | HC | chr1:8163279-8157128 | 20130731
          Length = 1020

 Score = 1269 bits (3285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/1087 (64%), Positives = 800/1087 (73%), Gaps = 80/1087 (7%)

Query: 1    MTLEDFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENK 60
            MTLEDFFTLTEMKDGLT PSRV+EL+S M++EQDS+VKN GDA RQWA+VASTIAATENK
Sbjct: 1    MTLEDFFTLTEMKDGLTTPSRVQELVSVMKKEQDSIVKNTGDAIRQWAAVASTIAATENK 60

Query: 61   DCLDLFIQLDGLRFINRWLNDAQNVGFSANDGTIEESTTAMLRAVEKLYIDREKSISSGI 120
            DCLDLFIQLDG  FI+RWLNDAQ +G   ND  +EES TAMLRAVEKLY D EK ISSG+
Sbjct: 61   DCLDLFIQLDGPWFIDRWLNDAQKLGGGTNDSVMEESITAMLRAVEKLYQDSEKLISSGM 120

Query: 121  WATVSNLLGHQSSKVQDRARVLYDNWKGGGNGDAESQHSDIGRMN-VSDKVVREECHLSS 179
            WATVSNLLGH SSKVQDRAR L+D WK  GNGDA+S   D G+ N + DK ++EE  LSS
Sbjct: 121  WATVSNLLGHHSSKVQDRARALFDKWKEVGNGDAKSHDMDTGQRNHMIDKNLKEEGQLSS 180

Query: 180  VKEAGNDDDHASRVVGGEESLLRSSDSQLPEKIANVQIHNSDNAFQSSLSLDCEDTKEKS 239
            V  A ND+ H  R+ GGE+S+LRSSD+Q+P+K ANV+  +SDNA QSS SL+CE+ KE+S
Sbjct: 181  VSGASNDNVHVLRLEGGEKSVLRSSDTQIPDKAANVKKESSDNAHQSSASLNCEELKERS 240

Query: 240  NQLAIVLVPTQEITPVGEAGMTSSETHNLPAPKQGSFKGQPDDLQLGDLSKKEMEDQNAN 299
            N L  VL   QE     E+ +TSS   NLP PKQGSFK QPDDLQL DLS KE ++ N N
Sbjct: 241  NHLTTVLTSVQESASASESELTSSGICNLPVPKQGSFKDQPDDLQLNDLSMKEEQELNDN 300

Query: 300  CPPEKLRAPHISLALIQPDPGPVSIGASEASIKP-------ESDLEHNIKSNEDGVCHKI 352
             PPEKL AP      I P P  VS+GASEA +KP       ES LEH++KS+E G+C K+
Sbjct: 301  GPPEKLGAP------INPKPESVSVGASEAQVKPVPAPIVPESSLEHDVKSSEVGICDKV 354

Query: 353  IVSDSVGITASDRMREVGDAKALNSSNQQPDKATENNDGCCSNTMQDLSISGIKLEKPED 412
            IVS S+   ASD+M  V  A+A +SSN Q  KA+                          
Sbjct: 355  IVSGSMKTPASDKMSVVDGARATDSSNPQLSKAS-------------------------- 388

Query: 413  LQMSFLETEDGREVKEEGKGHVSNNDNGTSNGSESFKQGKGPRSPKIIDKNSDIELDCGI 472
                         ++EEG   VSN+ + TSNGS+SFKQ K P SP IIDK+SD+ELD GI
Sbjct: 389  -------------MEEEGNSQVSNHVDDTSNGSDSFKQRKDPTSPNIIDKSSDMELDYGI 435

Query: 473  VDALEVARQVAQEVERDVKAVKEDSHVSTQGDDTSNGSDSFKQGEGPKSPGVVDKNSDME 532
            VDAL+VARQVA+EV          + VS Q DDTSN SDSFKQ +  +S  +V+KNS++E
Sbjct: 436  VDALDVARQVAEEV----------TQVSDQDDDTSNSSDSFKQSKVSRSANIVNKNSEIE 485

Query: 533  LEYGIVDALXXXXXXXXXXXXXIQNSSSEKISEGGNRQAGSSDSVGKNDELARVLPEEVS 592
            L+YG+VDAL             I NSSSEK SEGG RQAGS +SVGKND+LA  LPE VS
Sbjct: 486  LDYGMVDALQVARQVAEEVEREINNSSSEKSSEGGTRQAGSPESVGKNDDLACALPE-VS 544

Query: 593  SRQSNPAEACSEEEGHMSVLGDIEAEPEGPECLPDLESSQVTEAARDPGGNSEKSLCTFD 652
            SRQSN AEAC EE  HMSV  D+ AEPE   C+PDLESSQ+TEAA+DPGGNSEKSLCTFD
Sbjct: 545  SRQSNSAEACPEER-HMSVSDDVVAEPE---CIPDLESSQLTEAAQDPGGNSEKSLCTFD 600

Query: 653  LNEEVGSDDVGVSSNAMSTTPIPIVSASRTAQTSGLPTAPLKFDGTLQWKGSAATSAFRP 712
            LNEE GSDD+ VS+N +STTPIP+VSAS+ AQTSGLPTAPL+F+GTL WKGSAATSAFRP
Sbjct: 601  LNEEYGSDDMNVSANTISTTPIPVVSASKPAQTSGLPTAPLQFEGTLGWKGSAATSAFRP 660

Query: 713  ASPHENTESEKNVSVGGNSDISKQRQDCLDIDLNVAEGEEEFVKQIGESPGLPSGQSSVE 772
            ASP +N +++KNVS GGNSDISKQRQD LD DLNVA GE+E VKQIGES GLPSGQSSVE
Sbjct: 661  ASPRKNADNQKNVSAGGNSDISKQRQDFLDFDLNVAGGEDELVKQIGESSGLPSGQSSVE 720

Query: 773  LSPKRSRRFELDLNSVGDDGDTQPSDQRMEGQLLSGRNGYWXXXXXXXXXXXXXXVRNID 832
             SPKRS+RFELDLNS+GDDGDTQPSDQRMEGQL  GRNGYW              VRNID
Sbjct: 721  HSPKRSKRFELDLNSIGDDGDTQPSDQRMEGQLFFGRNGYWSPSPASSSSSMQPSVRNID 780

Query: 833  LNDKPLFQTDLVDKARPTKSSSNVETYGLSKSDAPVISILGAKVEVGRKEFVPQIWSIPN 892
            LND+P FQTDL+D+  PTKSSS++E YGLSKSDAP ISILGAKVEVGRKE VPQIWS+PN
Sbjct: 781  LNDRPYFQTDLLDQG-PTKSSSSIEVYGLSKSDAPAISILGAKVEVGRKEPVPQIWSLPN 839

Query: 893  GKANIEPAMDLTMSE-AGGALGLTPTVPYNNHSTVFGYNQLTXXXXXXXXXXKYGSGGTI 951
            GKA +EPA+DLTM   +GG  G+ P V Y NHST  GYN LT           YGSGGTI
Sbjct: 840  GKA-VEPAIDLTMMPGSGGVSGMGPAVSY-NHSTFLGYNGLTSMPPLSFSPAVYGSGGTI 897

Query: 952  PYMVDSRGAPIVPQVGAGVGP--SSYTQPPFIMSMTGTQLGLNGVGPSRPNFDLNSGLLI 1009
            PYMVDSRGAP+VPQVG       SSY QPP+IMSM G QLGLNGVGPSRPNFDLNSG +I
Sbjct: 898  PYMVDSRGAPVVPQVGGSSSNVLSSYAQPPYIMSMAGPQLGLNGVGPSRPNFDLNSGFMI 957

Query: 1010 DGGNRDALATRPFFFPAQGRAMEEQHVRTLPQXXXXXGVGGKRKEPD-SSWETYPFSYKH 1068
            DGGNRDAL  RPFFFP Q RAME+   RTL Q     GVGGKRKEPD S WETYPF YKH
Sbjct: 958  DGGNRDALTARPFFFPGQSRAMED---RTL-QQSSSSGVGGKRKEPDGSGWETYPFGYKH 1013

Query: 1069 -QQPPWK 1074
             QQPPWK
Sbjct: 1014 QQQPPWK 1020


>Medtr6g007787.1 | BAH domain; TFIIS helical bundle-like domain
           protein, putative | HC | chr6:1984298-1978119 | 20130731
          Length = 1589

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 10/150 (6%)

Query: 1   MTLEDFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENK 60
           M   +   +TE K GL     VE+ +  MQ   DS  K    A R    +   I+ TE+ 
Sbjct: 254 MLRTEIARITE-KGGLVDFEGVEKFVQLMQ--PDSADKKIDLAGRTM--LVDVISLTEHY 308

Query: 61  DCLDLFIQLDGLRFINRWLNDAQNVGFSANDGTI---EESTTAMLRAVEKLYIDREKSIS 117
           DCL  F+QL GL  ++ WL +         DG +   EE   A+LRA++KL ++     +
Sbjct: 309 DCLGWFVQLRGLPVLDEWLQEVHKGKI--GDGNVDKSEEFLLALLRALDKLPVNLHALQT 366

Query: 118 SGIWATVSNLLGHQSSKVQDRARVLYDNWK 147
             +  +V+NL  H++S++Q +AR L D WK
Sbjct: 367 CNVGKSVNNLRSHKNSEIQRKARSLVDTWK 396



 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 93/215 (43%), Gaps = 54/215 (25%)

Query: 616  EAEPEGPE-CLPDLESSQVTEAARDPGGNSEKSLCT----------FDLNEEVGSDDVG- 663
            E E E PE C  ++E  +   AA    GN+  S             FDLNE    +D G 
Sbjct: 1081 EKENEVPETCDSNIEGKKSVVAAELNAGNANTSPIASGSDAAVKLDFDLNEGYPVEDAGQ 1140

Query: 664  ---------VSSNAMSTT-----PIP---------IVSASRTAQTSGLPTAPLKFDGTLQ 700
                      SS+A+        PIP         I  AS T     LP  PL+  G L 
Sbjct: 1141 GDIVRQEDPTSSSAVHVPCPLPFPIPSLSGAFHASITVASATKGPVVLPENPLRSKGELG 1200

Query: 701  WKGSAATSAFRPASPHENTESEKNV----SVGGNSDISKQRQDCLDIDLNVAEGEEEFVK 756
            WKGSAATSAFRPA P +N E   N     SV   S   KQ +  LD DLNVA  +E   +
Sbjct: 1201 WKGSAATSAFRPAEPRKNAEMPSNTGDIPSVETTS--VKQGRAPLDFDLNVA--DEIGFE 1256

Query: 757  QIGESPGLPSG---QSSVELSPKRSRRFELDLNSV 788
             +G    L SG   +S+V L        +LDLN +
Sbjct: 1257 DVGYRGSLESGAHDRSAVGL--------DLDLNRL 1283


>Medtr6g007787.2 | BAH domain; TFIIS helical bundle-like domain
           protein, putative | HC | chr6:1984298-1978119 | 20130731
          Length = 1589

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 10/150 (6%)

Query: 1   MTLEDFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENK 60
           M   +   +TE K GL     VE+ +  MQ   DS  K    A R    +   I+ TE+ 
Sbjct: 254 MLRTEIARITE-KGGLVDFEGVEKFVQLMQ--PDSADKKIDLAGRTM--LVDVISLTEHY 308

Query: 61  DCLDLFIQLDGLRFINRWLNDAQNVGFSANDGTI---EESTTAMLRAVEKLYIDREKSIS 117
           DCL  F+QL GL  ++ WL +         DG +   EE   A+LRA++KL ++     +
Sbjct: 309 DCLGWFVQLRGLPVLDEWLQEVHKGKI--GDGNVDKSEEFLLALLRALDKLPVNLHALQT 366

Query: 118 SGIWATVSNLLGHQSSKVQDRARVLYDNWK 147
             +  +V+NL  H++S++Q +AR L D WK
Sbjct: 367 CNVGKSVNNLRSHKNSEIQRKARSLVDTWK 396



 Score = 61.2 bits (147), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 93/215 (43%), Gaps = 54/215 (25%)

Query: 616  EAEPEGPE-CLPDLESSQVTEAARDPGGNSEKSLCT----------FDLNEEVGSDDVG- 663
            E E E PE C  ++E  +   AA    GN+  S             FDLNE    +D G 
Sbjct: 1081 EKENEVPETCDSNIEGKKSVVAAELNAGNANTSPIASGSDAAVKLDFDLNEGYPVEDAGQ 1140

Query: 664  ---------VSSNAMSTT-----PIP---------IVSASRTAQTSGLPTAPLKFDGTLQ 700
                      SS+A+        PIP         I  AS T     LP  PL+  G L 
Sbjct: 1141 GDIVRQEDPTSSSAVHVPCPLPFPIPSLSGAFHASITVASATKGPVVLPENPLRSKGELG 1200

Query: 701  WKGSAATSAFRPASPHENTESEKNV----SVGGNSDISKQRQDCLDIDLNVAEGEEEFVK 756
            WKGSAATSAFRPA P +N E   N     SV   S   KQ +  LD DLNVA  +E   +
Sbjct: 1201 WKGSAATSAFRPAEPRKNAEMPSNTGDIPSVETTS--VKQGRAPLDFDLNVA--DEIGFE 1256

Query: 757  QIGESPGLPSG---QSSVELSPKRSRRFELDLNSV 788
             +G    L SG   +S+V L        +LDLN +
Sbjct: 1257 DVGYRGSLESGAHDRSAVGL--------DLDLNRL 1283